Avir002376.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Agapostemon virescens
Gene Symbol
mecom-b
Assembly
GCA_028453745.1
Location
JAQQRL010017392.1:1-2572[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 8 0.37 52 5.3 0.1 1 23 16 39 16 39 0.93
2 8 1.1e-05 0.0015 19.6 1.6 1 23 45 72 45 73 0.93
3 8 3.2e-06 0.00044 21.2 2.6 1 23 79 101 79 101 0.95
4 8 2e-05 0.0027 18.8 5.0 1 23 107 129 107 129 0.99
5 8 0.00039 0.054 14.7 0.7 2 21 137 156 136 157 0.95
6 8 4.6e-09 6.4e-07 30.2 1.2 1 23 511 533 511 533 0.99
7 8 2.4e-07 3.3e-05 24.8 1.7 1 23 539 562 539 562 0.97
8 8 6.8e-06 0.00094 20.2 3.4 1 23 568 590 568 590 0.99

Sequence Information

Coding Sequence
TTGGACGGCCACCTGGTGACCTGTCACCGATACCCTGCGCAGCAGCACCGCTGCGACAGCTGTCCTCGCGCGTACGCCTGGCGACCGTTGCTGGTCCGTCACCGTGCCATCGTCCACGGGGATCTGCGTAACTACCCCTGCGAGAACTGTCCGAAGTCGGACAATCCgcaggtcttcaccgatccgtcgaacctccagcgtcacatccgaacgcaccacgtgggcgcgagaagtcacgcttgcaccgagtgcgggaaaacgttcgcaacgagttccggtctgaagcagcacacccacatccacagcagcgtgaagccgttccagtgcgaggtctgcttcaaggcgtacacgcagttctcgaacctatgccggcacaagcgcatgcacgccgactgtcgcatgcagatcaagtgcgttaaatgcggacagtcgttcagcacggtcacctcgttgtcgaagcacaagcgATTCTGCGACTCGACGCCGCCGTCAGGTCCTCCGGGAGCCATGCCGCAGTTGCCGACCTCTGCAGCGAGCCCTTTCCTCGTCTACCCTCGTCCTCCGGGCGGGCTACCCTTCTACCCGCCCAGCATGATAGCTCCCTACCCTGGGATCTTCCCGAACGCCTCGAACTTCCTGAACGCACCGCTCTTGTTCCCGCCGAAGATCGAGGAGGCCGAGAAGAGAAGCGACAGTCCGAAGAAGGAGCGCTTCACTCCTCCAAGAGTTCATCCCCAGCACAGCAAAGTGTCTCCATCCACCGCGGAAGAGGCGACCTCGTCCTTCAGGCCGTCGCCCGCTAGACCGCCCGTCCAGCCGACTCCCGAGAGCGACGACGATCCTTCAAAGAAGCGAGAATCGTCCAGCAGAACCAGCGAGAAAAAGATAGACCCCGATCATCTACCCTCGGCAGCCGCGAACAAGGAGACAACGGACCAGCCACTGGACCTCCGAGTTCAAACCAAGAAGCAAGAAACCTGCTCGAACGCGGCCGAGAGGAAGAGTCACAGTCCTTCTCCAGTCCCGTCGCCAATGGAGGAGGACCCGCCTCCTCCGGATCCTCCGAAGCACGAGGAAGAGACCTCCGCGCCTATCAAAATCGATACCAAAGACGTGCGCGGCAGTCCTCACATAAGAACCAGTCTGTCCGGCGAGCATCCACCCGCGAGCACTCCCCCGCACATGGCTTACCCCCGACCGATCCACCCGATGTTCCTCGAGGCGATGTACCGCGGACCCGCGGGGGCGTTCCCGGGTTTCCCCGGCGGTCCCCCGCCTCCCGGAGGCGCGGCCCCGGAATCGAGATTGCTGCCACCTTTGCCGCCCTTCGGTCCTCCGCGGGGCCTACCTTTTTTAGGAACGCTCATGAATGGGCTCAGCGGAGCTAGGCACGGCGCCGGAGGGTTCGACTTGCTGGGCAGGCCTCCGCTGGGACCGTTCCccggcgtgaaacccttccaggaggccgtgatcgctccccaccatcaccaccatcaccaccatcatccccacggcaagatgaaggaccggtactcctgcaagttctgcggcaaggtgttcccaagatcggcgaacctcaccagacacctgcgcacccacaccggcgagcaaccgtacaagtgcaagtactgcgaacgatcgttcagcatttcaagcaatcttcaaagacacgtgcggaacatccacgacaaacagagaccgttcaagtgtccgctctgcgagaggtgtttcggccagcagaccaacctcgacagacacttgaagaaacacgaggccgacgacggcagcggcgccgtctccgtcgcggactcgcccggAAGCAGCAACGAGAACGAGCGAGAGGACACGTATTTCGACGAGATACGCTCGTTCATGGGCAAAGTCACCTACGGCGGAGAGGCCGGCTACGGACTGCCGCATCATCCCGCTTATCTGCCGAGTCGCCTGCACGAGATGCACGAGTCCAAGATGGAGACCGAGTACGACGAGGACGAGGACAGCGAGGAGGGTGTGTCTCCTCTGGACGAGACCGACGGATTGTCGCCAGCGGAGGCCAAAGAGTCCACTCCACCGCCTCAGTACGATCTGAAGCTGAGGGAAAAGCAGGAGCTGCTGAACAACAACACCGCCGAACCGGTGATCGAGATCTCCACATAG
Protein Sequence
LDGHLVTCHRYPAQQHRCDSCPRAYAWRPLLVRHRAIVHGDLRNYPCENCPKSDNPQVFTDPSNLQRHIRTHHVGARSHACTECGKTFATSSGLKQHTHIHSSVKPFQCEVCFKAYTQFSNLCRHKRMHADCRMQIKCVKCGQSFSTVTSLSKHKRFCDSTPPSGPPGAMPQLPTSAASPFLVYPRPPGGLPFYPPSMIAPYPGIFPNASNFLNAPLLFPPKIEEAEKRSDSPKKERFTPPRVHPQHSKVSPSTAEEATSSFRPSPARPPVQPTPESDDDPSKKRESSSRTSEKKIDPDHLPSAAANKETTDQPLDLRVQTKKQETCSNAAERKSHSPSPVPSPMEEDPPPPDPPKHEEETSAPIKIDTKDVRGSPHIRTSLSGEHPPASTPPHMAYPRPIHPMFLEAMYRGPAGAFPGFPGGPPPPGGAAPESRLLPPLPPFGPPRGLPFLGTLMNGLSGARHGAGGFDLLGRPPLGPFPGVKPFQEAVIAPHHHHHHHHHPHGKMKDRYSCKFCGKVFPRSANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHDKQRPFKCPLCERCFGQQTNLDRHLKKHEADDGSGAVSVADSPGSSNENEREDTYFDEIRSFMGKVTYGGEAGYGLPHHPAYLPSRLHEMHESKMETEYDEDEDSEEGVSPLDETDGLSPAEAKESTPPPQYDLKLREKQELLNNNTAEPVIEIST