Acni023795.1
Basic Information
- Insect
- Aethes cnicana
- Gene Symbol
- -
- Assembly
- GCA_963971205.1
- Location
- OZ020298.1:6104211-6105611[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 1.6e-05 0.0011 19.9 1.2 2 23 12 34 11 34 0.96 2 12 0.00014 0.0096 17.0 1.5 2 23 40 62 39 62 0.92 3 12 8.3e-05 0.0057 17.7 2.6 1 23 67 90 67 90 0.96 4 12 0.018 1.2 10.3 3.9 1 23 171 194 171 194 0.96 5 12 0.096 6.6 8.0 0.1 2 23 222 244 221 244 0.92 6 12 0.011 0.72 11.1 0.2 3 23 268 289 266 289 0.95 7 12 0.076 5.2 8.4 0.1 3 23 296 317 294 317 0.93 8 12 0.012 0.82 10.9 1.1 1 23 322 345 322 345 0.96 9 12 0.0026 0.18 13.0 0.2 2 23 351 373 350 373 0.93 10 12 6e-05 0.0041 18.1 4.8 1 23 377 400 377 400 0.97 11 12 0.0022 0.15 13.2 0.9 2 23 407 428 406 428 0.97 12 12 2.8e-05 0.0019 19.2 1.8 1 23 434 456 434 456 0.97
Sequence Information
- Coding Sequence
- ATGTGTCTGTCCTCCTACAGACTAGTCGACCTCAAGTGTACGGAATGTGGCAAAACATTCGAGTACTTTCGTAATCTTGTCATGCACGTCCGAAAAAACCACCTCGACAAACCATTGCCCTGCGAACAGTGCGATAGAAGTTTCAATAAAAAGTCTGAACTCATGGCTCATTGCAGAATTTATCATAGACGAGCTGGCTTTCAATGCGTCAAATGTGATAGCTGCTTCAGAACTTCTAGCTTATTGAGACTGCATCTTATGAATATACACTATTCTTCAGAGCGCAAATGCGCAAGGATACTATCACGGTTGAGAGAAAGGAATTCACAGAATTACCTCGCACTAGGAGAAGACGCTTTAGCGGCGATCGGGGAGTTGGAACAATCGGAAACAGAAGTCCAGCGCAGACGGCTGCGCGAAAGGAATGCCATGGCTAAACACAACCGCGAAAACATTGCCTGCATCCTCAACATGACGACTGCTATACCTTTCAAATATTATCAAAACAGATTCACTTGTTTTCATTGCTCCAAAGGCTTCAACGAGCATGAAGATATGAGAACTCACACGTTAATAGAACACCCATTCTACGATCTAGAGAGGAAATGCCCTAAATCATTGAAAGGTGTTAATTTGTGCATCAAACTGGACATCTCATCACTGTCCTGTAGGATTTGTTTCGAGTCCTTTAACGACTTTGATGTATTAGTGGACCATTTAATCTTAAATCACAAAGCTAAATATGATAAGAAAGTCACAGGCATAATGCAACCtttcaaacttgaaaaatacAACATGGCATGCCCTCTTTGTCCTCAGTCGTTCTCTTATTTCAACATCTTGCTTAAACACATGAACCAAGAGCATTCTCCAAAAACACACCTATGTTCAAATTGCGGAGCTGTGTTTGCGAGCGAAGCCATTTTAACTATGCACATAGCTCGAAAACACGGGCCCAAGATATTCAAATGCACTGACTGTAATATAGAATTAAACTCTTCACTTAAATTGAAAAGTCACAGAGCCAAGACGCACGGCGTACGCGAAGTCCCTTGCCAGAAGTGCCCAGAAAAGTTTTCCTCGGAGTACGAACGCCAGAAACATTTGATCCAAGCTCACGATATAGGCCACAAGTGCTCCTTTTGCGGGAAAATGTTCGTCAAAAACTCCTTCATGAGGAATCATATACGCCGAACTCACATGGAGGAGAAAAACGTACAATGTGCTGTTTGTAACCATAAGTTCTTCGATAATATTTTGCTCAAAATACACATGGTCAAACATATCGGGGAGAGGGATTTCCATTGTGACGTCTGTGGGAAGAGCTTCTACTGGAAGAAAAACCTTAGAGTGCACATGGCTTCACATAACAAGCAGCCAAAATTAAATGAGAACTTAtag
- Protein Sequence
- MCLSSYRLVDLKCTECGKTFEYFRNLVMHVRKNHLDKPLPCEQCDRSFNKKSELMAHCRIYHRRAGFQCVKCDSCFRTSSLLRLHLMNIHYSSERKCARILSRLRERNSQNYLALGEDALAAIGELEQSETEVQRRRLRERNAMAKHNRENIACILNMTTAIPFKYYQNRFTCFHCSKGFNEHEDMRTHTLIEHPFYDLERKCPKSLKGVNLCIKLDISSLSCRICFESFNDFDVLVDHLILNHKAKYDKKVTGIMQPFKLEKYNMACPLCPQSFSYFNILLKHMNQEHSPKTHLCSNCGAVFASEAILTMHIARKHGPKIFKCTDCNIELNSSLKLKSHRAKTHGVREVPCQKCPEKFSSEYERQKHLIQAHDIGHKCSFCGKMFVKNSFMRNHIRRTHMEEKNVQCAVCNHKFFDNILLKIHMVKHIGERDFHCDVCGKSFYWKKNLRVHMASHNKQPKLNENL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01246192; iTF_00462678; iTF_00680931; iTF_01135108; iTF_00155569; iTF_00156529; iTF_00021599; iTF_00010444; iTF_01136111; iTF_00325687; iTF_01072894; iTF_00658753; iTF_00657578; iTF_00660595; iTF_00656440;
- 90% Identity
- -
- 80% Identity
- -