Basic Information

Insect: Archips xylosteana
Gene Symbol: -
Assembly: GCA_947563465.1
Location: OX387370.1:4474535-4476506[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.0026 0.19 13.0 0.6 3 23 9 29 7 29 0.97

2 14 2.9 2.1e+02 3.5 0.0 2 22 57 77 56 79 0.78

3 14 2.1e-05 0.0015 19.6 1.2 2 23 100 122 99 122 0.96

4 14 0.00016 0.012 16.8 1.5 2 23 128 150 127 150 0.92

5 14 0.0002 0.014 16.5 3.8 1 23 155 178 155 178 0.96

6 14 0.085 6.2 8.3 4.5 1 23 257 280 257 280 0.94

7 14 0.053 3.9 8.9 0.1 2 23 308 330 307 330 0.92

8 14 0.032 2.4 9.6 0.1 3 23 354 375 352 375 0.95

9 14 0.14 10 7.5 0.1 3 23 382 403 380 403 0.92

10 14 1.4 1e+02 4.4 0.3 1 23 408 431 408 431 0.94

11 14 0.011 0.77 11.1 0.1 2 23 437 459 436 459 0.93

12 14 7.7e-05 0.0056 17.8 4.8 1 23 463 486 463 486 0.97

13 14 0.0012 0.088 14.1 1.5 2 23 493 514 492 514 0.97

14 14 8.1e-05 0.0059 17.8 1.9 1 23 520 542 520 542 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.0026	0.19	13.0	0.6	3	23	9	29	7	29	0.97
2	14	2.9	2.1e+02	3.5	0.0	2	22	57	77	56	79	0.78
3	14	2.1e-05	0.0015	19.6	1.2	2	23	100	122	99	122	0.96
4	14	0.00016	0.012	16.8	1.5	2	23	128	150	127	150	0.92
5	14	0.0002	0.014	16.5	3.8	1	23	155	178	155	178	0.96
6	14	0.085	6.2	8.3	4.5	1	23	257	280	257	280	0.94
7	14	0.053	3.9	8.9	0.1	2	23	308	330	307	330	0.92
8	14	0.032	2.4	9.6	0.1	3	23	354	375	352	375	0.95
9	14	0.14	10	7.5	0.1	3	23	382	403	380	403	0.92
10	14	1.4	1e+02	4.4	0.3	1	23	408	431	408	431	0.94
11	14	0.011	0.77	11.1	0.1	2	23	437	459	436	459	0.93
12	14	7.7e-05	0.0056	17.8	4.8	1	23	463	486	463	486	0.97
13	14	0.0012	0.088	14.1	1.5	2	23	493	514	492	514	0.97
14	14	8.1e-05	0.0059	17.8	1.9	1	23	520	542	520	542	0.97

Sequence Information

Coding Sequence: ATGTCGGCTGAAAGCCAGTACGGCTGCTTTTACTGCGGCGAGAAATACCCTGATTATAAGGAGTTCGTTAAGCACACTAAATCCCACGGTCCATGTAATGTCAAACACAAATCGCTGGTCAGCCAAAAGTTTGGCACTGTTGAAGTCAAGTTAGACATCTCTAACGTCACCTGCGAACTATGCGAGGAACCTTTCAATAACGTCGACGATATCATCCCTCATTTAACATCAAAACACGGATTGCATTACGATAAAGACGTTCCCATGTGTCTCTCATCCTACAGACTAGTCGATCTCAAGTGTACCGAATGTGGAAAAACTTTCGAGTACTTCCGCAATCTTGTCATGCACGTTAGGAAAAATCACATGGAAAAACTGCTGCCATGCGAACAATGTGATAGGAGCTTCAATAAAAAATCCGATTTGATGGCTCACTGTAGGATTTATCACAGGCGAGCGGGATTCCAGTGCGTCAAATGTGAACGCTGTTTTAGAACCACCAGCTTATTGAGGCTACATCTCATGAACACGCACGGCGCGTCCGAACGCAAGTGCACGAGGATACTCTCTAGTCTAAAATCTAGGAATTCTTACCTTGGATTAAATGCAGAAGATTTAGCAGCGTTCGAAGACATCGAAGACTGCGAAATCGAAACCCAACGTCAACGGTTGCGCGAGAGGAATGCCATAGCCAAACGCAACCGAGAAAATATCGCCTGCATACTAAACATGACAACAGCTATCCCATTTAAATACTACCAGAACAGATTCACATGCTTCCATTGCTCGAAAGACTTCAATGAACACGAAGACATGCGAACTCATACTTTGTTAGAACACCCATTCTACGATTTAGAAAGAAAATGTCCCAAATCGTTGAAGGGCGTGAATGTATGTATCAAACTCGATATATCTTCGCTGTCTTGCAGAATTTGTTTCGAACCATTTAACGATTTTGATTTGTTAGTCGACCATTTGATTTTAAATCATAAAGCTAATTACGATAAAAACGTGAGAGGTATCATGCAGCCGTTCAGGCTCGAGAAATATAAAATGGCGTGTCCGCTATGTCCTCAGGCTTTCTCGTACTTCAACATATTACTTAAACATATGAACCAAGAACATTCCCCTAAGACTCATCTTTGTTCGAACTGCGGCGCCGTTTTCGCTAGCGAAGCCATTTTGACAATGCATTTAGCGCGTATACACGGACCAAAAGCTTTCAAATGTATCGATTGTAATATGGAATTAAACTCTGCGCTTAAATTGAAAAGTCACAGAGCCAAAGCGCATGGCATGCGCGAGGTCCCGTGTCAAAAGTGCCCTGAAAAATTCCCTTCAGAATACGAAAGACAGAAGCATCTAATTCAAGCTCACGACATCGGCCACAAATGCTCGTTTTGCGGCAAAATGTTCGTCAAAAACTCTTTTATGAGGAATCACATACGCCGCACTCATATGGAGGAGAAAAACGTGCAGTGCACTGTTTGTAACCACaagttcttcgataatatcctgctcaagatccacatggtcaagcatgtaggggagagggatttccattgcgacgtctgcggaaagagtttcttctggaagaagaATCTTAGGGTTCACATGGCTTCCCATAACAAGCAGTCAAAAACTGCCGGCAGCTTATAG
Protein Sequence: MSAESQYGCFYCGEKYPDYKEFVKHTKSHGPCNVKHKSLVSQKFGTVEVKLDISNVTCELCEEPFNNVDDIIPHLTSKHGLHYDKDVPMCLSSYRLVDLKCTECGKTFEYFRNLVMHVRKNHMEKLLPCEQCDRSFNKKSDLMAHCRIYHRRAGFQCVKCERCFRTTSLLRLHLMNTHGASERKCTRILSSLKSRNSYLGLNAEDLAAFEDIEDCEIETQRQRLRERNAIAKRNRENIACILNMTTAIPFKYYQNRFTCFHCSKDFNEHEDMRTHTLLEHPFYDLERKCPKSLKGVNVCIKLDISSLSCRICFEPFNDFDLLVDHLILNHKANYDKNVRGIMQPFRLEKYKMACPLCPQAFSYFNILLKHMNQEHSPKTHLCSNCGAVFASEAILTMHLARIHGPKAFKCIDCNMELNSALKLKSHRAKAHGMREVPCQKCPEKFPSEYERQKHLIQAHDIGHKCSFCGKMFVKNSFMRNHIRRTHMEEKNVQCTVCNHKFFDNILLKIHMVKHVGERDFHCDVCGKSFFWKKNLRVHMASHNKQSKTAGSL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00023052;
90% Identity: iTF_01136111;
80% Identity: -