Cros030153.1
Basic Information
- Insect
- Choristoneura rosaceana
- Gene Symbol
- -
- Assembly
- GCA_037349165.1
- Location
- JAZBNJ010000048.1:3423866-3425834[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.0018 0.14 13.6 1.4 3 23 45 65 43 65 0.98 2 14 0.8 64 5.2 0.0 2 19 94 111 93 116 0.79 3 14 2e-05 0.0016 19.7 1.1 2 23 137 159 136 159 0.96 4 14 9.5e-05 0.0076 17.6 1.1 2 23 165 187 164 187 0.92 5 14 0.00054 0.043 15.2 3.4 1 23 192 215 192 215 0.96 6 14 0.14 11 7.7 4.0 1 23 295 318 295 318 0.94 7 14 0.059 4.8 8.8 0.1 2 23 346 368 345 368 0.92 8 14 0.016 1.3 10.6 0.1 3 23 392 413 390 413 0.96 9 14 0.0023 0.19 13.2 0.0 3 23 420 441 419 441 0.96 10 14 2.9 2.3e+02 3.5 0.2 1 23 446 469 446 469 0.94 11 14 0.012 0.93 11.0 0.1 2 23 475 497 474 497 0.93 12 14 8.6e-05 0.0069 17.7 4.8 1 23 501 524 501 524 0.97 13 14 0.0029 0.23 12.9 2.9 2 23 531 552 530 552 0.97 14 14 9e-05 0.0072 17.7 1.9 1 23 558 580 558 580 0.97
Sequence Information
- Coding Sequence
- ATGTTGGCTAAGAGAGaaataaaacacCAGTCAATCGGCGGGCTGGGCGCCACTGAGCGTAGGAGAAAAAACTTGGTGATACTTTTCAACAATACCACAGTAATACCGTTTAAAAGCGGCAGCCAATTCGGCTGCTTTTACTGCGGCGAGAAATATCGTGATTATAAGGAGTTCGTTAAACATACCAAGTCTCACGGTCCGTGCAATGTCAAACACAAATCCCTGGTCACCCAAAAGTACGGTACTTCAATAGAAGTGAAGTTAGACATTTCTAACGTCACATGCGAACTCTGCGACGAGCCTTTCAATAGCCTCGACGAGATCATCCCCCATTTAATTGCAAAACACGAATTGCATTATGACCAAGACGTCCCCATGTGTCTCTCCTGTTACAGACTAGTCGATCTCAAATGTACCGAATGTGGAAAAAGTTTCGAGTATTTTCGCAATCTTGTTATGCACGTTAGGAAAAATCACATGGAAAAACTCGTGCCTTGCGAACAGTGCGATAAgagtttcaataaaaaatccgaCTTGGCTGCTCATTGTAGGATTTATCACAGGCGGGCGGGGTTCCAGTGCGTCAAATGTGAACTCTGTTTCAGAAAGAATAGCTTGTTGAGGCTACATCTAATGAACACGCATGGCGCGTCTGAAAGCAAGTGTGCGAGAATACTTTCTAGACTCAAATCTAGGAGGAATTCTTACCTTAGACTGGACGCAGAAGACTTGGCAGCTTTCGAAGACATCGATGACTGCGAAATCGAAACCCAACGTAGACGGTTGCGCGAGAGAAACGCTATAGCCAAACGCAACCGGGAAAATATAGCCTGCATACTAAACATGACAACGGCTATCCCTTTTAAATATTATCAGAACAGATTCACTTGCTTCCATTGCTCGAAAGATTTCAATGAACACGAAGACGTGCGGACGCATACTTTATTAGAACACCCGTTCTATGATTTAGAGAGAAAATGTCCTAAATCCTTGAAGGGCGTGAATGTATGTCTCAAACTAGATATAACTTCGCTGTCTTGCAGGATTTGTTTCGAACCTTTTAACGATTTTGATTTGTTAGTCGACCATTTGATTTTAAATCATAAAGCTAATTACGATAAAAACTTGAGAGGTATTATGCAGCCGTTTAGGCTCGAGAAATATAACATGGCTTGTCCGTTGTGCCCTCAGGCCTTCTCTTATTTCAACATTTTACTTAAACATATGAACAAAGAACATTCCCCTAAGACACGCCTATGCTCCAACTGCGGTGCAGTTTTCGCCAGCGAAGCTCTTTTGACAATGCATATAGCGCGAATACACGGACTGAAAGTTTTCAAATGTATAGATTGCAACGTCGAATTAAACTCTGCgcttaaattaaaaagtcaCAGAGCCAAAGCACATGGCATTCGTGAGGTTCCGTGCCAAAAGTGTCCTGAAAAATTCCCTTCAGAATACGAAAGGCAGAAGCATTTAATTCAAGCTCACGACATCGGCCATAAATGCTCGTTTTGTGGCAAAATGTTCGTCAAAAACTCTTTTATGAGGAATCACATACGCCGCACTCATATGGAGGAGAAAAATGTGCAGTGCGCTGTCTGTAACCACAAGTTTTTCGATAATCACCTCCTCAAGATCCACATGGTCAAACATGTAGGAGAAAGGGATTTCCATTGCGACGTCTGCGGGAAGAGTTTCTTCTGGAAGAAAAATCTTAGGGTTCACATGGCATCCCATAACAAGCAATCTAAAACTACTGGCAGCTTATAG
- Protein Sequence
- MLAKREIKHQSIGGLGATERRRKNLVILFNNTTVIPFKSGSQFGCFYCGEKYRDYKEFVKHTKSHGPCNVKHKSLVTQKYGTSIEVKLDISNVTCELCDEPFNSLDEIIPHLIAKHELHYDQDVPMCLSCYRLVDLKCTECGKSFEYFRNLVMHVRKNHMEKLVPCEQCDKSFNKKSDLAAHCRIYHRRAGFQCVKCELCFRKNSLLRLHLMNTHGASESKCARILSRLKSRRNSYLRLDAEDLAAFEDIDDCEIETQRRRLRERNAIAKRNRENIACILNMTTAIPFKYYQNRFTCFHCSKDFNEHEDVRTHTLLEHPFYDLERKCPKSLKGVNVCLKLDITSLSCRICFEPFNDFDLLVDHLILNHKANYDKNLRGIMQPFRLEKYNMACPLCPQAFSYFNILLKHMNKEHSPKTRLCSNCGAVFASEALLTMHIARIHGLKVFKCIDCNVELNSALKLKSHRAKAHGIREVPCQKCPEKFPSEYERQKHLIQAHDIGHKCSFCGKMFVKNSFMRNHIRRTHMEEKNVQCAVCNHKFFDNHLLKIHMVKHVGERDFHCDVCGKSFFWKKNLRVHMASHNKQSKTTGSL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00023052;
- 90% Identity
- -
- 80% Identity
- -