Apis014235.1
Basic Information
- Insect
- Acyrthosiphon pisum
- Gene Symbol
- FoxL1
- Assembly
- GCA_005508785.1
- Location
- NC:19538745-19552143[+]
Transcription Factor Domain
- TF Family
- Fork_head
- Domain
- Fork_head domain
- PFAM
- PF00250
- TF Group
- Helix-turn-helix
- Description
- The fork head domain is a conserved DNA-binding domain (also known as a winged helix) of about 100 amino-acid residues. Drosophila melanogaster fork head protein is a transcription factor that promotes terminal rather than segmental development, contains neither homeodomains nor zinc-fingers characteristic of other transcription factors [1]. Instead, it contains a distinct type of DNA-binding region, containing around 100 amino acids, which has since been identified in a number of transcription factors (including D. melanogaster FD1-5, mammalian HNF-3, human HTLF, Saccharomyces cerevisiae HCM1, etc.). This is referred to as the fork head domain but is also known as a 'winged helix' [1, 2, 3]. The fork head domain binds B-DNA as a monomer [2], but shows no similarity to previously identified DNA-binding motifs. Although the domain is found in several different transcription factors, a common function is their involvement in early developmental decisions of cell fates during embryogenesis [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 4.5 4.8e+03 -2.3 0.0 10 33 36 59 32 82 0.67 2 2 7.1e-40 7.5e-37 125.2 0.0 1 87 133 225 133 226 0.90
Sequence Information
- Coding Sequence
- ATGAACCGCGGGGGCCAACCCCATTCACCGGAACAGCCAAGCCACACCTCACCCGCAGTGGACAGCATGAAGAACGAAGAGCCGAGTCATCATCAGCAGCGGAACATGCTGGCCGAGGCGATAGCGTCGCTGCCACCCGTGCCCCAGAACTTGTCGGCCATCGCCCTGTTCCATCAGCTGCCCATACTGTACCAGCAACACTACCAGCACATGTTGCAATCTCGCATCCTGCCCTACCTACAAGAATCGCTGAGGTTGCAGAGCTCCGTCAACTTTGCAGATAAACCTCAGATGCCGACGGTGCCTGCTATCAGCCTGTTCGACCAACCCGCCGAACAGAACGCAGCGGCCGCGGCCGCGGTGGCCGCTGCGGACATTGCGGCCGCCGGCTGCAACGAGAAACCGCCTTACTCGTACATAGCGCTCATCGCCATGGCCATCACGTCCACACCCAACCAGCGGATGACGCTTAGCGAGATATACAACTATATTACGGACAAGTTCCCGTATTACCGGCGCAATAGACAGGGCTGGCAGAACTCCATCAGACACAACCTGAGCCTGAACGACTGTTTCATCAAGATCCCGAGGGGCCGGACCGGCATGGACGACAACATGGGCGGCGGCAAGGGCAGCTACTGGACGCTGGACCCGGTGGCCGCGGCCGACATGTTCGAGCGAGGCAACTACAGGCGGAGGCGGATGCGCCGGCACAGGCCATACCAACAGCAAAGCCACCACCAGACGAACCAACAGGACATCAAGTCGTTGctgcagcaacagcaacagccgCCGGCCAGTCctcaccaccatcaccaccaccactTCTCGGTGTACCCCGAGTTTCAGTTGACCGGCAGGAACGCCGTGGCCGTGACCACCGCGGCCGAGTCGCTAGCGGACAACCAGCACGCAGCCGTTGCCGTCGCGGACACGGTGTCCTCGCACAACCTGGCGTTCCACATCGAGAACCTGATACAGAAGAAGCACCGCGGTGCCGAGATGTCTCAGGAAGAGATCGTCTCGTCCAGCGGCGcgcacaacaacaacaacgatcTGCTGCAGTACGCGGCCGGCGACGATCACCaacaccaccaccgccaccagcTACCACTGACGCAGCACGCGGTCGAGTCCAAGCCCAAATTGATTATCATCAACGATGAGGACGACAGCAACATCAGTGGTGGTAGTGGCGGCAGACGATGCTAA
- Protein Sequence
- MNRGGQPHSPEQPSHTSPAVDSMKNEEPSHHQQRNMLAEAIASLPPVPQNLSAIALFHQLPILYQQHYQHMLQSRILPYLQESLRLQSSVNFADKPQMPTVPAISLFDQPAEQNAAAAAAVAAADIAAAGCNEKPPYSYIALIAMAITSTPNQRMTLSEIYNYITDKFPYYRRNRQGWQNSIRHNLSLNDCFIKIPRGRTGMDDNMGGGKGSYWTLDPVAAADMFERGNYRRRRMRRHRPYQQQSHHQTNQQDIKSLLQQQQQPPASPHHHHHHHFSVYPEFQLTGRNAVAVTTAAESLADNQHAAVAVADTVSSHNLAFHIENLIQKKHRGAEMSQEEIVSSSGAHNNNNDLLQYAAGDDHQHHHRHQLPLTQHAVESKPKLIIINDEDDSNISGGSGGRRC
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01304666; iTF_00134049; iTF_01499462; iTF_00340388; iTF_01305353; iTF_01328421; iTF_01346892; iTF_01169665; iTF_01346275; iTF_00468773; iTF_01037553; iTF_00940181; iTF_01032690; iTF_01031762; iTF_01167412; iTF_01303993; iTF_00972858;
- 90% Identity
- iTF_01304666;
- 80% Identity
- -