Ains004417.1
Basic Information
- Insect
- Acromyrmex insinuator
- Gene Symbol
- rhi
- Assembly
- GCA_017607455.1
- Location
- JAANHZ010000257.1:709330-712729[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.045 1.4e+02 1.8 0.3 26 49 375 398 367 400 0.89 2 11 9.9e-06 0.03 13.5 0.3 23 52 431 459 425 461 0.84 3 11 0.0066 20 4.5 0.1 20 48 455 483 453 488 0.83 4 11 9.9e-06 0.029 13.5 0.3 23 52 518 546 512 548 0.84 5 11 0.0075 22 4.3 0.1 20 47 542 569 540 575 0.83 6 11 9.9e-06 0.029 13.5 0.3 23 52 605 633 599 635 0.84 7 11 0.0075 22 4.3 0.1 20 47 629 656 627 662 0.83 8 11 9.9e-06 0.029 13.5 0.3 23 52 692 720 686 722 0.84 9 11 0.0075 22 4.3 0.1 20 47 716 743 714 749 0.83 10 11 1e-05 0.03 13.5 0.3 23 52 779 807 773 809 0.84 11 11 0.013 38 3.6 0.1 20 44 803 827 801 833 0.86
Sequence Information
- Coding Sequence
- ATGAGCATTTCTATTATGGAAGAGTACACAAGTTCAAGACAGATCAGACAAGGAGGCTTGGACATTTGTATTCATCTTACAGAAATGGACCAGGAAAACCCCAGACTGAAACCATCGATCAAGCTCAAAACCAAGTCTGGCAAAGCAACTACCGAAGAAAATGCAGACATAAACTTAAGTAACGAAGGATatattgtcgataaaatattaGCCAAAcgttttaatactaaaaaaagatGCTGGGAATACTTAATCAAATGGAAAGGCTATCCACATGAAAACAATACATGGGAATCTGCAGAGGCTCTAGCAACATGCAAAAGTTTATTGGATGAATTTGAGCGGAGTCACGCCAAGCAAAAAGAGTCTAAAGAAGTGCAACAGAAGGATAATACAAAAGTCGTCGGATGTGTGAGTTTGCCGTTGCAAAAATCAGTGATAAAAGCTAAGACTAGTCAGCCTGGATCAAGTACTGCTCAAACAGGACGCTCGATGCggtctaataaattaaaagtgatgaataaaattaagcaATGGTGTAGCTTAATGAAAGATGAAGAGAATGAATTATTAGGTAAAAGGAGGATCGATGATTCGGAAAAAGGAGGAAGCAGTGCCGCAAAGGAATTGATAGGTGACGCGGGCAGTGATGATGAATGGACTGGGAAATCTGAAGACGAAAGACTATTGGACCGTAGCGTGATTCAACATGCATTCAATCGCGCTAATTCGCAGTCGAGTGGATTCAACAAAATCTCGATTTCATCCACTGATCTGGCAACGTCATTACGATTGCAATCTGCAGATGAAGCAAAATCTAGCCAACCACCTGTTTTAGTAATTAACGAGGGAGTTGTTAAAATCGATCCCAAACAAATGCCGAATTTGGCTTCCGATCTGTTGCGATACGTTATGTCGCAAAAAGACAATATCATCAAATTGAATTCGTCTCCCATTGGGAAATTAGCTGTTAAAGGATCTTCAACGACGCAAGGTGTTGTAATGATTCAAAATCGAGataatacaaatgtaatcACCTACAAATGCGGAAAGTGtagtaaaatgtttatttgtgAATTGCATTTGCGCCAGCATGAGAAAATTCATATGAAAAAATCTTATCAATGCgagttttgtaaaaaaatattgtcTAACAAAAGGTATCTACACAGACATAAGAAAGAAATCCATTTCAATGTACTTAACGATTGTAACGATTGTAAGAAGGGTTTCAGTAATGAACAGGATTTCAATAATCATTTAATCACGAAGCATTCTAACATCGATGCAAGACCGTATAAATGTGAGATATGTCCAGCTGCATTTAAACGTTCAAACAACCTTAAACGGCATATACAAACACATGCAGAGAAACCATATGTTTGCGAGATTTGCAGCaaagtgtttaattttaaaattaatctaatccAACACAAACGTATACACAATGATAAAAAGCCGTATAACGATTGTAACGATTGTAAGAAGAGTTTCAATAATGAACAGGATTTCAATAATCATTTAATCACGAAGCATTCTAACATCGATGCAAGACCGTATAAATGTGAGATATGTCCAGCTGCATTTAAACGTTCAAACAACCTTAAACGGCATATACAAACACATGCAGAGAAACCATATGTTTGCGAGATTTGCAGCaaagtgtttaattttaaaattaacctAATCCAACACAAACGTATACATAGTGATAAAAAGCCGTATAACGATTGTAACGATTGTAAGAAGAGTTTCAATAATGAACAGGATTTCAATAATCATTTAATCACGAAGCATTCTAACATCGATGCAAGACCGTATAAATGTGAGATATGTCCAGCTGCATTTAAACGTTCAAACAACCTTAAACGGCATATACAAACACATGCAGAGAAACCATATGTTTGCGAGATTTGCAGCaaagtgtttaattttaaaattaacctAATCCAACACAAACGTATACATAGTGATAAAAAGCCGTATAACGATTGTAACGATTGTAAGAAGAGTTTCAATAATGAACAGGATTTCAATAATCATTTAATCACGAAGCATTCTAACATCGATGCAAGACCGTATAAATGTGAGATATGTCCAGCTGCATTTAAACGTTCAAACAACCTTAAACGGCATATACAAACACATGCAGAGAAACCATATGTTTGCGAGATTTGCAGCaaagtgtttaattttaaaattaacctAATCCAACACAAACGTATACATAGTGATAAAAAGCCGTATAACGATTGTAACGATTGTAAGAAGAGTTTCAATAATGAACAGGATTTCAATAATCATTTAATCACGAAGCATTCTAACATCGATGCAAGACCGTATAAATGTGAGATATGTCCAGCTGCATTTAAACGTTCAAACAACCTTAAACGGCATATACAAACACATGCAGAGAAACCATATGTTTGCGAGATTTGCAGCaaagtgtttaattttaaaattaacctAATCCAACACAAACGTATACATAGTGATAAAAAACTGTATAAATGTTCGATATGTAATAAAGGCTTTATGCGAAAAGCTAGTCTTCTTGCACACATACAAAATGAGGTCATTCatgatataacatttaattcattaccagattcacatttatttttctatttttgttacatattcatatta
- Protein Sequence
- MSISIMEEYTSSRQIRQGGLDICIHLTEMDQENPRLKPSIKLKTKSGKATTEENADINLSNEGYIVDKILAKRFNTKKRCWEYLIKWKGYPHENNTWESAEALATCKSLLDEFERSHAKQKESKEVQQKDNTKVVGCVSLPLQKSVIKAKTSQPGSSTAQTGRSMRSNKLKVMNKIKQWCSLMKDEENELLGKRRIDDSEKGGSSAAKELIGDAGSDDEWTGKSEDERLLDRSVIQHAFNRANSQSSGFNKISISSTDLATSLRLQSADEAKSSQPPVLVINEGVVKIDPKQMPNLASDLLRYVMSQKDNIIKLNSSPIGKLAVKGSSTTQGVVMIQNRDNTNVITYKCGKCSKMFICELHLRQHEKIHMKKSYQCEFCKKILSNKRYLHRHKKEIHFNVLNDCNDCKKGFSNEQDFNNHLITKHSNIDARPYKCEICPAAFKRSNNLKRHIQTHAEKPYVCEICSKVFNFKINLIQHKRIHNDKKPYNDCNDCKKSFNNEQDFNNHLITKHSNIDARPYKCEICPAAFKRSNNLKRHIQTHAEKPYVCEICSKVFNFKINLIQHKRIHSDKKPYNDCNDCKKSFNNEQDFNNHLITKHSNIDARPYKCEICPAAFKRSNNLKRHIQTHAEKPYVCEICSKVFNFKINLIQHKRIHSDKKPYNDCNDCKKSFNNEQDFNNHLITKHSNIDARPYKCEICPAAFKRSNNLKRHIQTHAEKPYVCEICSKVFNFKINLIQHKRIHSDKKPYNDCNDCKKSFNNEQDFNNHLITKHSNIDARPYKCEICPAAFKRSNNLKRHIQTHAEKPYVCEICSKVFNFKINLIQHKRIHSDKKLYKCSICNKGFMRKASLLAHIQNEVIHDITFNSLPDSHLFFYFCYIFIL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00016829;
- 90% Identity
- iTF_00016829;
- 80% Identity
- iTF_00016829;