Ains004417.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Acromyrmex insinuator
Gene Symbol
rhi
Assembly
GCA_017607455.1
Location
JAANHZ010000257.1:709330-712729[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 18 0.14 6.9 6.4 4.9 1 23 347 369 347 369 0.98
2 18 0.0023 0.12 12.0 4.4 1 23 374 397 374 397 0.96
3 18 7.1e-05 0.0036 16.7 1.0 3 23 404 425 403 425 0.97
4 18 3.9e-08 1.9e-06 27.0 0.5 1 23 433 455 433 455 0.99
5 18 3.3e-06 0.00017 20.9 0.6 1 23 460 482 460 482 0.98
6 18 4.6e-05 0.0023 17.3 1.4 3 23 491 512 490 512 0.97
7 18 3.9e-08 1.9e-06 27.0 0.5 1 23 520 542 520 542 0.99
8 18 3.3e-06 0.00017 20.9 0.6 1 23 547 569 547 569 0.98
9 18 4.6e-05 0.0023 17.3 1.4 3 23 578 599 577 599 0.97
10 18 3.9e-08 1.9e-06 27.0 0.5 1 23 607 629 607 629 0.99
11 18 3.3e-06 0.00017 20.9 0.6 1 23 634 656 634 656 0.98
12 18 4.6e-05 0.0023 17.3 1.4 3 23 665 686 664 686 0.97
13 18 3.9e-08 1.9e-06 27.0 0.5 1 23 694 716 694 716 0.99
14 18 3.3e-06 0.00017 20.9 0.6 1 23 721 743 721 743 0.98
15 18 4.6e-05 0.0023 17.3 1.4 3 23 752 773 751 773 0.97
16 18 3.9e-08 1.9e-06 27.0 0.5 1 23 781 803 781 803 0.99
17 18 3.3e-06 0.00017 20.9 0.6 1 23 808 830 808 830 0.98
18 18 1.2e-05 0.00062 19.1 0.1 1 21 836 856 836 861 0.95

Sequence Information

Coding Sequence
ATGAGCATTTCTATTATGGAAGAGTACACAAGTTCAAGACAGATCAGACAAGGAGGCTTGGACATTTGTATTCATCTTACAGAAATGGACCAGGAAAACCCCAGACTGAAACCATCGATCAAGCTCAAAACCAAGTCTGGCAAAGCAACTACCGAAGAAAATGCAGACATAAACTTAAGTAACGAAGGATatattgtcgataaaatattaGCCAAAcgttttaatactaaaaaaagatGCTGGGAATACTTAATCAAATGGAAAGGCTATCCACATGAAAACAATACATGGGAATCTGCAGAGGCTCTAGCAACATGCAAAAGTTTATTGGATGAATTTGAGCGGAGTCACGCCAAGCAAAAAGAGTCTAAAGAAGTGCAACAGAAGGATAATACAAAAGTCGTCGGATGTGTGAGTTTGCCGTTGCAAAAATCAGTGATAAAAGCTAAGACTAGTCAGCCTGGATCAAGTACTGCTCAAACAGGACGCTCGATGCggtctaataaattaaaagtgatgaataaaattaagcaATGGTGTAGCTTAATGAAAGATGAAGAGAATGAATTATTAGGTAAAAGGAGGATCGATGATTCGGAAAAAGGAGGAAGCAGTGCCGCAAAGGAATTGATAGGTGACGCGGGCAGTGATGATGAATGGACTGGGAAATCTGAAGACGAAAGACTATTGGACCGTAGCGTGATTCAACATGCATTCAATCGCGCTAATTCGCAGTCGAGTGGATTCAACAAAATCTCGATTTCATCCACTGATCTGGCAACGTCATTACGATTGCAATCTGCAGATGAAGCAAAATCTAGCCAACCACCTGTTTTAGTAATTAACGAGGGAGTTGTTAAAATCGATCCCAAACAAATGCCGAATTTGGCTTCCGATCTGTTGCGATACGTTATGTCGCAAAAAGACAATATCATCAAATTGAATTCGTCTCCCATTGGGAAATTAGCTGTTAAAGGATCTTCAACGACGCAAGGTGTTGTAATGATTCAAAATCGAGataatacaaatgtaatcACCTACAAATGCGGAAAGTGtagtaaaatgtttatttgtgAATTGCATTTGCGCCAGCATGAGAAAATTCATATGAAAAAATCTTATCAATGCgagttttgtaaaaaaatattgtcTAACAAAAGGTATCTACACAGACATAAGAAAGAAATCCATTTCAATGTACTTAACGATTGTAACGATTGTAAGAAGGGTTTCAGTAATGAACAGGATTTCAATAATCATTTAATCACGAAGCATTCTAACATCGATGCAAGACCGTATAAATGTGAGATATGTCCAGCTGCATTTAAACGTTCAAACAACCTTAAACGGCATATACAAACACATGCAGAGAAACCATATGTTTGCGAGATTTGCAGCaaagtgtttaattttaaaattaatctaatccAACACAAACGTATACACAATGATAAAAAGCCGTATAACGATTGTAACGATTGTAAGAAGAGTTTCAATAATGAACAGGATTTCAATAATCATTTAATCACGAAGCATTCTAACATCGATGCAAGACCGTATAAATGTGAGATATGTCCAGCTGCATTTAAACGTTCAAACAACCTTAAACGGCATATACAAACACATGCAGAGAAACCATATGTTTGCGAGATTTGCAGCaaagtgtttaattttaaaattaacctAATCCAACACAAACGTATACATAGTGATAAAAAGCCGTATAACGATTGTAACGATTGTAAGAAGAGTTTCAATAATGAACAGGATTTCAATAATCATTTAATCACGAAGCATTCTAACATCGATGCAAGACCGTATAAATGTGAGATATGTCCAGCTGCATTTAAACGTTCAAACAACCTTAAACGGCATATACAAACACATGCAGAGAAACCATATGTTTGCGAGATTTGCAGCaaagtgtttaattttaaaattaacctAATCCAACACAAACGTATACATAGTGATAAAAAGCCGTATAACGATTGTAACGATTGTAAGAAGAGTTTCAATAATGAACAGGATTTCAATAATCATTTAATCACGAAGCATTCTAACATCGATGCAAGACCGTATAAATGTGAGATATGTCCAGCTGCATTTAAACGTTCAAACAACCTTAAACGGCATATACAAACACATGCAGAGAAACCATATGTTTGCGAGATTTGCAGCaaagtgtttaattttaaaattaacctAATCCAACACAAACGTATACATAGTGATAAAAAGCCGTATAACGATTGTAACGATTGTAAGAAGAGTTTCAATAATGAACAGGATTTCAATAATCATTTAATCACGAAGCATTCTAACATCGATGCAAGACCGTATAAATGTGAGATATGTCCAGCTGCATTTAAACGTTCAAACAACCTTAAACGGCATATACAAACACATGCAGAGAAACCATATGTTTGCGAGATTTGCAGCaaagtgtttaattttaaaattaacctAATCCAACACAAACGTATACATAGTGATAAAAAACTGTATAAATGTTCGATATGTAATAAAGGCTTTATGCGAAAAGCTAGTCTTCTTGCACACATACAAAATGAGGTCATTCatgatataacatttaattcattaccagattcacatttatttttctatttttgttacatattcatatta
Protein Sequence
MSISIMEEYTSSRQIRQGGLDICIHLTEMDQENPRLKPSIKLKTKSGKATTEENADINLSNEGYIVDKILAKRFNTKKRCWEYLIKWKGYPHENNTWESAEALATCKSLLDEFERSHAKQKESKEVQQKDNTKVVGCVSLPLQKSVIKAKTSQPGSSTAQTGRSMRSNKLKVMNKIKQWCSLMKDEENELLGKRRIDDSEKGGSSAAKELIGDAGSDDEWTGKSEDERLLDRSVIQHAFNRANSQSSGFNKISISSTDLATSLRLQSADEAKSSQPPVLVINEGVVKIDPKQMPNLASDLLRYVMSQKDNIIKLNSSPIGKLAVKGSSTTQGVVMIQNRDNTNVITYKCGKCSKMFICELHLRQHEKIHMKKSYQCEFCKKILSNKRYLHRHKKEIHFNVLNDCNDCKKGFSNEQDFNNHLITKHSNIDARPYKCEICPAAFKRSNNLKRHIQTHAEKPYVCEICSKVFNFKINLIQHKRIHNDKKPYNDCNDCKKSFNNEQDFNNHLITKHSNIDARPYKCEICPAAFKRSNNLKRHIQTHAEKPYVCEICSKVFNFKINLIQHKRIHSDKKPYNDCNDCKKSFNNEQDFNNHLITKHSNIDARPYKCEICPAAFKRSNNLKRHIQTHAEKPYVCEICSKVFNFKINLIQHKRIHSDKKPYNDCNDCKKSFNNEQDFNNHLITKHSNIDARPYKCEICPAAFKRSNNLKRHIQTHAEKPYVCEICSKVFNFKINLIQHKRIHSDKKPYNDCNDCKKSFNNEQDFNNHLITKHSNIDARPYKCEICPAAFKRSNNLKRHIQTHAEKPYVCEICSKVFNFKINLIQHKRIHSDKKLYKCSICNKGFMRKASLLAHIQNEVIHDITFNSLPDSHLFFYFCYIFIL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00017012;
90% Identity
iTF_00017012;
80% Identity
iTF_00017012;