Aech005338.1
Basic Information
- Insect
- Acromyrmex echinatior
- Gene Symbol
- rhi
- Assembly
- GCA_000204515.1
- Location
- NW:1513055-1521866[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 7 0.55 2.9e+03 -2.3 0.1 26 49 432 455 428 456 0.86 2 7 0.00016 0.86 9.1 0.1 23 52 488 517 482 519 0.90 3 7 0.0049 26 4.3 0.1 20 47 513 540 511 546 0.83 4 7 0.00016 0.86 9.1 0.1 23 52 576 605 570 607 0.90 5 7 0.0049 26 4.3 0.1 20 47 601 628 599 634 0.83 6 7 8.4e-06 0.045 13.2 0.3 23 45 664 686 657 692 0.85 7 7 0.007 38 3.8 0.1 20 44 688 712 686 718 0.86
Sequence Information
- Coding Sequence
- ATGAGCATTTCTATTATGGAAGAGTACACAAGTTCAAGACAGGTCAGACAAGGAGGCTTGGACATTTGTATTCATCTTACAGAAATGGACCAGGAAAACCCCAGACTGAAACCATCGATCAAGCTCAAAACCAAGTCTGGCAAAGCAACTACCGAAGAAAATGCAGACATAAGTAACGAAAAATGTattgtcgataaaatattaGCCAAAcgttttaatactaaaaagaGATGCTGGGAATACTTAATCGAATGGAAAGGCAATCCACAGGAAAAACCAAAACTGAAACCATCGATCAAACCCAAAACCAAGTCTGGCAAAGCAACTACCGAAGAAGATGCAGACCTAAGTAACGAAGGATatattgtcgataaaatattaGCCAAAcgttttaatactaaaaaaagatgCTGGGAATACTTAATCAAATGGAAAGGCTATCCACATGAAAACAATACATGGGAATCTGCAGAGGCTGTAGCAACATGCAAAAGTTTATTGGATGAATTTGAGCGGAGTCACGCCAAGCAAAAAGAGTCTAAAGAAGTGCAACAGAAGGATAATACAAAAGTCGTCGGATGTGTGAGTTTGCCGTTGCAAAAATCAGTGATAAAAGCTAAGACTAGTCAGCCTGGATCAAGTACTGCTCAAACAGGACGCTCGATGCggtctaataaattaaaagtgatGAATAAAATCAAGCAATGGTGTAGCTTAATGAAAGATGAAGAGAATGAACTATTAGGTAAAAGGAGGATCGATGATTCGGAAAAAGGAGGAAGCAGTGCCGCAAAGGAATTGATAGGTGACGCGGGCAGTGATGATGAATGGACTGGGAAATCTGAAGACGAAAGACTATTGGGCCGTAGCGTGATTCAACATGCATTCAATCGCGCTAATTCGCAGTCGAGTGGATTCAACAAAATCTCGATTTCATCCACTGATCTGGCAACGTCATTAGGATTGCAATCTGCAGATGAAGCAAAATCTAGCCAACCACCTGTTTTAGTAATTAACGAGGGAGTTGTTAAAATCGATTCCAAACAAATGCCGAATTTGGCTTCCGATCTGTTGCGATACGTTATGTCGCAAAAAGACAATATCATCAAATTGAATTCGTCTCCCATTGGGAAATTAGCTGTTAAAGGATCTTCAACGACGCAAGGTGTTGTAATGGTTCAAAATCGAGataatacaaatgtaatcACCTACAAATGCGGAAAGTGtagtaaaatgtttatttgtgAATTGCATTTGCGCCAGCATGAGAAAATTCATATGAAAAAATCTTATCAATGCgagttttgtaaaaaaatattgtcTAACAAAGGGTATCTACACAGACATAAGAAAGAAGTCCATTTCAATGTACTTAACGGTTGTAACGATTGTAAGAAGGGTTTCAGTAATGAACAAGATttcaataatcatttaatCACAAAGCATTCTAACATCGATGCAAGACCGTATAAATGTGAGATATGTCCAGCTGCATTTAAACGTTTAGGCAACCTTAAACGGCATACTCTGCAAACACATGCAGAGAAACCATATATTTGCAAGATTTGCAGCaaagtgtttaattttaaaattaatctaatccAACACAAACGTATACATAGTGATAAAAAGCCGTATAACGATTGTAACGATTGTAGGAAGGGTTTCAATAATGAACAGGATttcataaatcatttaatcACGAAGCATTCTAACATCGATGCAAGACCGTATAAATGTGAGATATGTCCAGCTGCATTTAAACGTTTAGGCAACCTTAAACGGCATACTCTGCAAACACATGCAGAGAAACCATATATTTGCAAGATTTGCAGCaaagtgtttaattttaaaattaacctAATCCAACACAAACGTATACATAGTGATAAAAAGCCGTATAACGATTGTAACGATTGTAAGAAGAGTTTCAATAATGAACAGAATttcaataatcatttaatCACGAAGCATTCTAAGATCAATGCAAGACCGTATAAATGTGAGATATGTCCAGCTGCATTTAAACGTTCAAACAATCTTAAACGGCATATACAAACACATGCAGAGAAACCATATGTTTGCGAGATTTGCAgcaaagtatttaattttaaaattaacctAATCCAACACAAACGTATACATAGTGATAAAAAACTGTATAAATGTTCGATATGTAATAAAGGCTTTATGCGAAAAGCTAGTCTTCTTGCACACATACAAAATGAGggTCACATGAGTGATACCGTAGTAAAGGATTAA
- Protein Sequence
- MSISIMEEYTSSRQVRQGGLDICIHLTEMDQENPRLKPSIKLKTKSGKATTEENADISNEKCIVDKILAKRFNTKKRCWEYLIEWKGNPQEKPKLKPSIKPKTKSGKATTEEDADLSNEGYIVDKILAKRFNTKKRCWEYLIKWKGYPHENNTWESAEAVATCKSLLDEFERSHAKQKESKEVQQKDNTKVVGCVSLPLQKSVIKAKTSQPGSSTAQTGRSMRSNKLKVMNKIKQWCSLMKDEENELLGKRRIDDSEKGGSSAAKELIGDAGSDDEWTGKSEDERLLGRSVIQHAFNRANSQSSGFNKISISSTDLATSLGLQSADEAKSSQPPVLVINEGVVKIDSKQMPNLASDLLRYVMSQKDNIIKLNSSPIGKLAVKGSSTTQGVVMVQNRDNTNVITYKCGKCSKMFICELHLRQHEKIHMKKSYQCEFCKKILSNKGYLHRHKKEVHFNVLNGCNDCKKGFSNEQDFNNHLITKHSNIDARPYKCEICPAAFKRLGNLKRHTLQTHAEKPYICKICSKVFNFKINLIQHKRIHSDKKPYNDCNDCRKGFNNEQDFINHLITKHSNIDARPYKCEICPAAFKRLGNLKRHTLQTHAEKPYICKICSKVFNFKINLIQHKRIHSDKKPYNDCNDCKKSFNNEQNFNNHLITKHSKINARPYKCEICPAAFKRSNNLKRHIQTHAEKPYVCEICSKVFNFKINLIQHKRIHSDKKLYKCSICNKGFMRKASLLAHIQNEGHMSDTVVKD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00015544;
- 90% Identity
- iTF_00015544;
- 80% Identity
- iTF_00015544;