Basic Information

Insect: Acromyrmex echinatior
Gene Symbol: rhi_1
Assembly: GCA_000204515.1
Location: NW:1513055-1521866[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.11 6.8 6.7 4.9 1 23 404 426 404 426 0.98

2 12 0.00075 0.045 13.5 3.3 1 23 431 454 431 454 0.96

3 12 0.00011 0.0068 16.1 1.3 3 23 461 482 461 482 0.98

4 12 2.3e-06 0.00014 21.4 0.4 1 23 490 513 490 513 0.95

5 12 4.4e-06 0.00026 20.5 1.0 1 23 518 540 518 540 0.98

6 12 0.0004 0.024 14.4 0.6 3 23 549 570 548 570 0.97

7 12 2.3e-06 0.00014 21.4 0.4 1 23 578 601 578 601 0.95

8 12 4.4e-06 0.00026 20.5 1.0 1 23 606 628 606 628 0.98

9 12 1.8e-05 0.0011 18.6 1.8 3 23 637 658 636 658 0.97

10 12 3.2e-08 1.9e-06 27.3 0.5 1 23 666 688 666 688 0.99

11 12 2.7e-06 0.00016 21.2 0.6 1 23 693 715 693 715 0.98

12 12 6.9e-06 0.00041 19.9 0.2 1 22 721 742 721 745 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.11	6.8	6.7	4.9	1	23	404	426	404	426	0.98
2	12	0.00075	0.045	13.5	3.3	1	23	431	454	431	454	0.96
3	12	0.00011	0.0068	16.1	1.3	3	23	461	482	461	482	0.98
4	12	2.3e-06	0.00014	21.4	0.4	1	23	490	513	490	513	0.95
5	12	4.4e-06	0.00026	20.5	1.0	1	23	518	540	518	540	0.98
6	12	0.0004	0.024	14.4	0.6	3	23	549	570	548	570	0.97
7	12	2.3e-06	0.00014	21.4	0.4	1	23	578	601	578	601	0.95
8	12	4.4e-06	0.00026	20.5	1.0	1	23	606	628	606	628	0.98
9	12	1.8e-05	0.0011	18.6	1.8	3	23	637	658	636	658	0.97
10	12	3.2e-08	1.9e-06	27.3	0.5	1	23	666	688	666	688	0.99
11	12	2.7e-06	0.00016	21.2	0.6	1	23	693	715	693	715	0.98
12	12	6.9e-06	0.00041	19.9	0.2	1	22	721	742	721	745	0.92

Sequence Information

Coding Sequence: ATGAGCATTTCTATTATGGAAGAGTACACAAGTTCAAGACAGGTCAGACAAGGAGGCTTGGACATTTGTATTCATCTTACAGAAATGGACCAGGAAAACCCCAGACTGAAACCATCGATCAAGCTCAAAACCAAGTCTGGCAAAGCAACTACCGAAGAAAATGCAGACATAAGTAACGAAAAATGTattgtcgataaaatattaGCCAAAcgttttaatactaaaaagaGATGCTGGGAATACTTAATCGAATGGAAAGGCAATCCACAGGAAAAACCAAAACTGAAACCATCGATCAAACCCAAAACCAAGTCTGGCAAAGCAACTACCGAAGAAGATGCAGACCTAAGTAACGAAGGATatattgtcgataaaatattaGCCAAAcgttttaatactaaaaaaagatgCTGGGAATACTTAATCAAATGGAAAGGCTATCCACATGAAAACAATACATGGGAATCTGCAGAGGCTGTAGCAACATGCAAAAGTTTATTGGATGAATTTGAGCGGAGTCACGCCAAGCAAAAAGAGTCTAAAGAAGTGCAACAGAAGGATAATACAAAAGTCGTCGGATGTGTGAGTTTGCCGTTGCAAAAATCAGTGATAAAAGCTAAGACTAGTCAGCCTGGATCAAGTACTGCTCAAACAGGACGCTCGATGCggtctaataaattaaaagtgatGAATAAAATCAAGCAATGGTGTAGCTTAATGAAAGATGAAGAGAATGAACTATTAGGTAAAAGGAGGATCGATGATTCGGAAAAAGGAGGAAGCAGTGCCGCAAAGGAATTGATAGGTGACGCGGGCAGTGATGATGAATGGACTGGGAAATCTGAAGACGAAAGACTATTGGGCCGTAGCGTGATTCAACATGCATTCAATCGCGCTAATTCGCAGTCGAGTGGATTCAACAAAATCTCGATTTCATCCACTGATCTGGCAACGTCATTAGGATTGCAATCTGCAGATGAAGCAAAATCTAGCCAACCACCTGTTTTAGTAATTAACGAGGGAGTTGTTAAAATCGATTCCAAACAAATGCCGAATTTGGCTTCCGATCTGTTGCGATACGTTATGTCGCAAAAAGACAATATCATCAAATTGAATTCGTCTCCCATTGGGAAATTAGCTGTTAAAGGATCTTCAACGACGCAAGGTGTTGTAATGGTTCAAAATCGAGataatacaaatgtaatcACCTACAAATGCGGAAAGTGtagtaaaatgtttatttgtgAATTGCATTTGCGCCAGCATGAGAAAATTCATATGAAAAAATCTTATCAATGCgagttttgtaaaaaaatattgtcTAACAAAGGGTATCTACACAGACATAAGAAAGAAGTCCATTTCAATGTACTTAACGGTTGTAACGATTGTAAGAAGGGTTTCAGTAATGAACAAGATttcaataatcatttaatCACAAAGCATTCTAACATCGATGCAAGACCGTATAAATGTGAGATATGTCCAGCTGCATTTAAACGTTTAGGCAACCTTAAACGGCATACTCTGCAAACACATGCAGAGAAACCATATATTTGCAAGATTTGCAGCaaagtgtttaattttaaaattaatctaatccAACACAAACGTATACATAGTGATAAAAAGCCGTATAACGATTGTAACGATTGTAGGAAGGGTTTCAATAATGAACAGGATttcataaatcatttaatcACGAAGCATTCTAACATCGATGCAAGACCGTATAAATGTGAGATATGTCCAGCTGCATTTAAACGTTTAGGCAACCTTAAACGGCATACTCTGCAAACACATGCAGAGAAACCATATATTTGCAAGATTTGCAGCaaagtgtttaattttaaaattaacctAATCCAACACAAACGTATACATAGTGATAAAAAGCCGTATAACGATTGTAACGATTGTAAGAAGAGTTTCAATAATGAACAGAATttcaataatcatttaatCACGAAGCATTCTAAGATCAATGCAAGACCGTATAAATGTGAGATATGTCCAGCTGCATTTAAACGTTCAAACAATCTTAAACGGCATATACAAACACATGCAGAGAAACCATATGTTTGCGAGATTTGCAgcaaagtatttaattttaaaattaacctAATCCAACACAAACGTATACATAGTGATAAAAAACTGTATAAATGTTCGATATGTAATAAAGGCTTTATGCGAAAAGCTAGTCTTCTTGCACACATACAAAATGAGggTCACATGAGTGATACCGTAGTAAAGGATTAA
Protein Sequence: MSISIMEEYTSSRQVRQGGLDICIHLTEMDQENPRLKPSIKLKTKSGKATTEENADISNEKCIVDKILAKRFNTKKRCWEYLIEWKGNPQEKPKLKPSIKPKTKSGKATTEEDADLSNEGYIVDKILAKRFNTKKRCWEYLIKWKGYPHENNTWESAEAVATCKSLLDEFERSHAKQKESKEVQQKDNTKVVGCVSLPLQKSVIKAKTSQPGSSTAQTGRSMRSNKLKVMNKIKQWCSLMKDEENELLGKRRIDDSEKGGSSAAKELIGDAGSDDEWTGKSEDERLLGRSVIQHAFNRANSQSSGFNKISISSTDLATSLGLQSADEAKSSQPPVLVINEGVVKIDSKQMPNLASDLLRYVMSQKDNIIKLNSSPIGKLAVKGSSTTQGVVMVQNRDNTNVITYKCGKCSKMFICELHLRQHEKIHMKKSYQCEFCKKILSNKGYLHRHKKEVHFNVLNGCNDCKKGFSNEQDFNNHLITKHSNIDARPYKCEICPAAFKRLGNLKRHTLQTHAEKPYICKICSKVFNFKINLIQHKRIHSDKKPYNDCNDCRKGFNNEQDFINHLITKHSNIDARPYKCEICPAAFKRLGNLKRHTLQTHAEKPYICKICSKVFNFKINLIQHKRIHSDKKPYNDCNDCKKSFNNEQNFNNHLITKHSKINARPYKCEICPAAFKRSNNLKRHIQTHAEKPYVCEICSKVFNFKINLIQHKRIHSDKKLYKCSICNKGFMRKASLLAHIQNEGHMSDTVVKD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00015733;
90% Identity: iTF_00015733;
80% Identity: iTF_00015733;