Basic Information

Insect: Acromyrmex echinatior
Gene Symbol: -
Assembly: GCA_000204515.1
Location: NW:947795-958059[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 0.027 1.6 8.6 3.1 1 23 1277 1299 1277 1299 0.97

2 18 7.5e-05 0.0045 16.7 1.8 1 23 1409 1431 1409 1431 0.98

3 18 0.00047 0.028 14.1 1.3 1 23 1434 1456 1434 1456 0.98

4 18 3.5e-06 0.00021 20.8 1.5 2 23 1503 1525 1502 1525 0.97

5 18 0.031 1.9 8.4 2.9 1 23 1531 1553 1531 1553 0.95

6 18 0.0055 0.33 10.8 0.7 1 20 1559 1578 1559 1583 0.93

7 18 0.0016 0.094 12.5 2.0 1 23 1650 1672 1650 1672 0.97

8 18 0.00054 0.032 14.0 4.7 1 23 1726 1748 1726 1748 0.97

9 18 0.00062 0.037 13.8 0.6 1 20 1753 1772 1753 1774 0.94

10 18 0.066 4 7.4 0.3 2 23 1785 1806 1785 1806 0.97

11 18 4e-05 0.0024 17.5 0.6 2 23 1845 1866 1844 1866 0.97

12 18 3.5e-05 0.0021 17.7 1.5 1 23 1871 1893 1871 1893 0.95

13 18 0.0016 0.094 12.5 1.7 1 20 1899 1918 1899 1921 0.93

14 18 1.1e-05 0.00065 19.3 0.5 1 23 1937 1959 1937 1959 0.95

15 18 5.2e-07 3.2e-05 23.4 0.6 1 23 1965 1987 1965 1987 0.99

16 18 5.7e-05 0.0034 17.0 0.2 1 23 1993 2015 1993 2015 0.97

17 18 0.034 2 8.3 6.9 1 23 2021 2043 2021 2043 0.96

18 18 0.0071 0.43 10.4 0.6 1 20 2049 2068 2049 2070 0.90

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	0.027	1.6	8.6	3.1	1	23	1277	1299	1277	1299	0.97
2	18	7.5e-05	0.0045	16.7	1.8	1	23	1409	1431	1409	1431	0.98
3	18	0.00047	0.028	14.1	1.3	1	23	1434	1456	1434	1456	0.98
4	18	3.5e-06	0.00021	20.8	1.5	2	23	1503	1525	1502	1525	0.97
5	18	0.031	1.9	8.4	2.9	1	23	1531	1553	1531	1553	0.95
6	18	0.0055	0.33	10.8	0.7	1	20	1559	1578	1559	1583	0.93
7	18	0.0016	0.094	12.5	2.0	1	23	1650	1672	1650	1672	0.97
8	18	0.00054	0.032	14.0	4.7	1	23	1726	1748	1726	1748	0.97
9	18	0.00062	0.037	13.8	0.6	1	20	1753	1772	1753	1774	0.94
10	18	0.066	4	7.4	0.3	2	23	1785	1806	1785	1806	0.97
11	18	4e-05	0.0024	17.5	0.6	2	23	1845	1866	1844	1866	0.97
12	18	3.5e-05	0.0021	17.7	1.5	1	23	1871	1893	1871	1893	0.95
13	18	0.0016	0.094	12.5	1.7	1	20	1899	1918	1899	1921	0.93
14	18	1.1e-05	0.00065	19.3	0.5	1	23	1937	1959	1937	1959	0.95
15	18	5.2e-07	3.2e-05	23.4	0.6	1	23	1965	1987	1965	1987	0.99
16	18	5.7e-05	0.0034	17.0	0.2	1	23	1993	2015	1993	2015	0.97
17	18	0.034	2	8.3	6.9	1	23	2021	2043	2021	2043	0.96
18	18	0.0071	0.43	10.4	0.6	1	20	2049	2068	2049	2070	0.90

Sequence Information

Coding Sequence: atgGAATTGAAGACAAGACAAACGAGAAAGCTGCTGGAGCTTTTGGAGCAGCAAattaacaaattatatttattgctgATCACTGTTTCTATTAATCCATCAGAAATTTTGGTTACGAAATCATTACTCCATGaacaattgcattttttaactCAGAGATTCAATAATTTAGGCGATGATAATTGCGACTGTGAAGaagcaaatgtaaaatttgctGATACAGtaacaaatttgaaatatacttctctattgaaaaatattgatgagCTTatTAAGGATATTAAATGCGATAATATTGATAGCAATGCAGCCAGACATAAGACGGAATCattgcttaataattttacatcagCTTTACGAGTATTGGAAGATTTAGAATGCTTGCCATTGAAGCAGAGATTTCAGGATTGTCTGGATTATGTTAAAGAGATGAGCACAGCAAACGAGATTGAGgatcttcaaaatataaagGAATTAGGCACTTCGATATTAGAGATACTCGAACCACTACAGAATTACAGAAAAAGTTTAGCGTCTGCTTTTCTATCGCAGAATCTAGCTTTATATACTTCTCAATTATGCACATCATTTGAAATGCTAGTACAACTGGCTCAGGAACAGCATCAGTTAAATGCAccaatttatGCTTGCAAGAAATATGTTTGTGAAAGAATATGTACTTGTTGTGAGATGATATTGAACTTGATGAATGACTCAAATCCATCGCTGGAAAAGGAAACTTGCGAAAGGGAGAATCATTTTGTTTACAGAATGGATTTGGCATTAGAcgttatattagaaataccgAGTAAAACGCATGAACAGCAGCTATCTGAATGTACCACGGAACTGTGGTTGAGACTGGAGGACGTATTCTCTCATGCTATGGCAATTACCCAAGTGTGTCAgccatataattttaaagccaTAACTGGTTCATGTCAATCCATAGTGTTGGAGTACGAGAAATTAAAGCAGCAATTACTCTCGGAAACCCAGGCTCTTTATCGTTTGGAACGTAAAGTTAATATAGCGGTACTAACGCTCGCAATGGAAGTATTCAGCAATCCTTACATTACTTTGAAAAAACTCGTTATGACATGCGGAAATTCTTTAAGCGCGAAAAGAAGATCGAAAAGTGATTTAAATGATCTCATAGAAGATTTTGATCAATTCTTTGATCAAACTATGCAAATTGGAATATTTGCGATCGCTTGTTGCAAAGACAAGAACCGCAATAACAAAATTCGTAATTGTCTCGCAGGATTCGAATCCTTAGAAACTGAATTAATTTCTGCCATAATTTCCTTCTATTTACATCCAGATAACAAAGAAATGCGTTCGAGTGTTAAACTGTTGACTATGCAATGGCAATTAGAGATGAATAAGTTTCAGAATGCTGTAAATCTCATTATAAACTCGGCTGCTTTCTGTcaaGTAGTTATGGATAGTCTTCAAGAACGTATAACGGCAATCTCAGATTGTCTGGATAACAGAGAGCCAGTAACACAACTTCAAGTGCAAGGTATTGTTCAGCGTGCTTCAGCTTTGTCTAGTCAAGTCACAGCAATTGTAAATGATATTGGCACTGAAAACATTGATCGTCAAACGATAATGATGACAAGAGAATTGAAAGCAGCTATATTTGAAGCCAACACCGCTGCCAAAACTCTTCTGGTGGAGAATGCAACGGAGCCTCAACAATTGCGAGTAATAAAACGATgtgaattaatattgaatgttGTTCAAAGATTACAGTCTGCTTTAGCTACAATTATGAACAATACAACGCATGAAAAAACTGTGAGAGGTCAAGGAGATTCCATTCATGGTAGCATATCAAATGCCATGAACTTTCCATCCACAATTTATGGTTTGCCGCGCGATGAAAATAGTCTAGTTTATATTAGAACACCCTATACAGTAAAAACGCATAAATCACAGGTGTCCATTCAACCGGCAAACAGTACAGTACAGAAACCGTCGGATCTGTCGTATTTGATACCTTACATAAAGAACGGCCGTACATTGCGCAGCGAGCACTCCATCATGTATACACcgcataaaaacaaaaatgtaacagAGGTAGCCGTTAAAAATGAGATGTCCCTTAGGAATCTATCTAGCATTAGACAACATCTTTTTAGCAGAGATAGCTTCAGCATTCACGTCGATTTTGATATAGCCGAAGAGAGCATGGATTTAACAGCTGCTTTAGAAAAGATAACTTCATCGTCCACGTCGGAAAATGCAACGTTCTCTTCATGCCAATTCTCAAAAGTAGAAAACGTATCTTCGGGAAGTGTAAACAAGGAATTGGTTTTCAATATCGTAGAAAAACTAAGTCAAACTGTTAGACCAGAAACGGAAAGTTTGAGCAAATCCGCGATAACGGAGAAGATGAGTGAATGTGCCATATCTGGTGGCGGTGATGCATCCTTAATCATGGAATCGCGTCAAAAACTCAGTAGCGTTCGATCTCCAGACAATAAGATACAAAAGTCAACCTCGGGGCAACATGAGAAAGTACGACATAGTGCAGTTACCGAGAACAGCCTTCACACGTCTGAACTCGATCCAAGTCAGTTCGCCGAGCAAAACATGGACGCCGTGGCGATACATACGTCGGATCCGCCGCAGGGCGAGGACGCGATCACGTCCGCTATGAAGATATGCCGCATCTGCCTGCTCGACAATCTGATGATGCGCGATCTCTTCGCAGAGAACGAGGTCGCGTCCCTATCGGTGAAGGCAATGAGCTTCGCCAACGTTAAGATGTTACCAGGTGATGGTTTACCAACACAGGTGTGCTGTATGTGCGCCGACAAGTTGGAATCGGCATATGAGTTTAAGTTACAAGTGGAGCAAGCTGACAATGTTCTTCGAGAAAAGCTTGTGGGAGGAATAATAAAGGACGAATTGTTTCTTAATGAGGTTGAAATACACTTGGATGCCGAGAAAAATAATGGTTTGGAAGAGATGAATGACAGTGCTGATTATGAATCTACTGATACATTGCCAGTTGAAACAGAAACTGACAAGAACTTtctgaaaaatcaattaattattttggaagCTGAAAAATTGGCAGAGACAGATGGAATACAACAAGATTCAGAACAAGATAACTTGCAAGAAAGCATTGAGGAAGAATTGCAGCAAGAATTAGCCAGCTCAGAAGACATGTCAGATGCTATTGATGAATCTAGGGATGAAGTTTCTTCCAACAAGAATATTATTCGAAGCTGCACAGATACAATTCCAACAGatgaacataattatataatgcagCAACAGTGTATTATTTTGCATACTGAACAATTCttccataaaaaaatgcaGGAGACCGTATCAGAATTTAAACACGAAATAACGAAATACGAAGAATCACTATCTGAACAAAatcaagaaaatcTATCTGAACAAAATCAAGAAAATCTATCTGAACAAAATCAAGAAAATCAATCTGAGCAAAACCAAGAGATTCAGGCTGAACAAAATCAAGAAATTCCAACTCAGCAAATTCACGAGACTCTGGCTGAGCAAACTGAAGAGACTCCAGTTCAAAATGCTCAAGCTGAACAGGAGAATCAAACTGaacaaaatcaaaatcaaaaaatggaattattacAGAacgaagtattaaaaaatgatactaaTGAGCCAGTCGTGGAAGAATCACCCCAAAATGAAACTAGAAGAAGTAAACGTAGATTGGCTCGTCGGATATTCACCGAGCGGGATTCCGATGAggagaattattttgaaaatctgaatctcAGTTCACGATTGAAAAAAGTGCAGGCAGATAAGACagagaagatttttttcatgtgtTACTTGTGCGATAAACAGTTTCTTTCAAAGAGCGTCTTGAAAGAGCATATGCATTCCCATGAAGAAGTAAGGAAAACATTGTCTCTGAAAAAAACGCCGGAGAAACCGCAGAGTGCAGACCAGCGTTTCCGCCGTGAAAACGCCgagtatatgtacataatctCGTTTACTAAACACATTAAGCAACACGAGCGAGAGGGGCAGGAAGCGAAGGAAGATTCGATGTCGCTTGAGATGTTTCATGAGGATGACTACAGTCTAGACTTAGATAATGGCAACAAATCGGATGTTGAATGTAGAAAACAAAAGAGAGGAAGTACAGTATACGACGATGTTGCAAGCGACAATGATCAGGATAAGAAAAGAAAGCGTAGTCTTATTGAGGAGTTTACGTGTAACAAATGTCCAGAAAAATTCGATACAAAGCGAGGGTTGCAAAAGCATTCGCTCACGCATGTTAGCTTCAAGTGCAGTGTGTGCAACGAGGAATACGACACTCTAGAACAACTAAAAAATCACCGAACAAAGCATGTGATCGAAGGCGTACTTACTGAGCAAGACTTGGAAGAAGATATGAAGCAAATGATCAAATGCGAGGAGAATGATGACAATAGTAAGAACATCAAAGATGGAGAGAACAGTGAATCCGTCGAAATCACGAAGGAACTAAAGTGTTCGATATGTTCAATAACATTCTCACGCAAGAAAGCGCTCTCCAGACACATGCAGACAACACACTCCGACACCCATTCTTACGAATGCAAGATATGCTGTCAACAATTTGCACGGAAGGATTTCCTACGCAGGCATGCCGAACAGCATGCACGAGTGAAGACTTATAAATGTACTCAATGTAACAAAACCTTCGGCAATGAGCTCACGATGAGAAATCACTTGGTTGCCACAAATCACAAGACATTTATACAGGGACAGGAATACGATCCCAATAAGCGTATAAAGCGCGTGGCGGCGAGAGCAGCACAGAAGATCATCGACAAGATCAAGACTGAGGACGGTCTCGAAGATTACGATGATAATACCGATTATGATGTTAAATTGGACAAGCATTATGTTATTAAGCACGATGCAAAGAAGTACAGGTATAAAGAATTTGAGTGCGCAACCTGTAATAAGAGGTACTGCTTGAAACAAGCGTTGGCGAGGCATATGGAGCAACatgtaaaaaaggaaaaggcaGAGAAGACAATGGAGAAAGCGGCGGAGAAGCAGAAGAAGACCGctttagaaaagaaagaagcgCAGAAGAGCAACACGGATGATAACGATGGCGATAATAACTCCGACTTTGAAAGTGGTCTCGACTGGCCAGTAGACAGCCATGAATGCACCACGTGCAAGAAGCAATACAGTACGAAGAAGTCGTTACTGCGTCATCAACTACTGCATGAGGAGCCAAATTTCGAATGCGATATCTGCAGTATCAAGTTCTATCGAAAAGATAAACTGAAGGCGCACTACGATAAGTGCGCGGAAAAGAATCCTGATCAGGTGAGGAAGTGCAACATCTGCGGCGACAGTTTCGAAAACAATGAGATTCTGCGCGAGCACAGGGCCAAGCACGTTACCGAGGGTATCCTAACGGAGGAGGATCTGAGAGACACCGAGCCAAAATCCGAAGAAAAGAGactaaatgataaaatgactCGGAAGAGGAGGACCGATATTGTGGGGCTCGAGTGTACCGAATGCAACAAACAATATACCTCTAGGAAGGGTCTGCTGCGACACATTCAGGTTCACGAGGGTAAGAAGTACCTATGCGAAATATGTCCAAAGAAATTCTATCGGCGGGAACACCTGAAGATTCACGTGGCAAAACACAACATGATCAAACCATATAAGTGCACTCGTTGCTCCAAACGGTTCATTAAGGAGGAGCAGCTCAATAACCATCTACCTAAGCATGATCGCACTTTTAAGAAGAACAAGGAGACCGATAGTTCGAAGAGATTCCTCTGTGAGATCTGCAGCAAGAGCTTTACGCAGTCAACAACGCTGCTAGCGCATCTGCGTGCTCATAAGGGTATCAAACCGTATGTGTGCGAAGTATGCTCCAGGCCATTCACCACTAATGCCTACTTGAAGATGCATATGCGCACGCACACGCAGGAACGTCCGTACATCTGCCAATATTGTTCGCGAGCGTTTGCCCGTGCCGACACCTTGGCAAATCATCTGACGTCGCATACTGGCGAAGCCAAGTACCATTGCAAGTGCTGTCCAAAGAACTTCCGGCGATTGAAATCCTTGAAGGAACACATGTTTATTCATACGGGTCAACGACCTTACGAGTGTCCAACTTGCGACAGAAAGTTTAACAATAACGGCAGTCGCTACGCGCACAGCAAGCGCTGCAAACAGAATCTTTTGCAGAATCAGAACCGGGCGCAACAGGTAATCCAGCAGacacagcagcaacagcaacaacaacagTTACAACATCAACATCAACATCAGCCACAGCAAGTGCAAATACAGATGCAGCCAGAACCGCATCCAGTTAGGTTGCATCAAACCACGATCGGCCAGGCACAAGTAATCAAGGCGCAAAACATTAAAACAATCGCTATAGCGAGACAAGCTGAGCCTACGGTAACTACGCAACATCAGGTTATGCAGCATCAAGAAATACTAATGCCTTTAATCCTGCCACTTACCGTCACTCTTGCTGATGTAGGCGAAGAGGTGATACTACCTGAAGGTACAAAAATATTCACCACTTCTTAA
Protein Sequence: MELKTRQTRKLLELLEQQINKLYLLLITVSINPSEILVTKSLLHEQLHFLTQRFNNLGDDNCDCEEANVKFADTVTNLKYTSLLKNIDELIKDIKCDNIDSNAARHKTESLLNNFTSALRVLEDLECLPLKQRFQDCLDYVKEMSTANEIEDLQNIKELGTSILEILEPLQNYRKSLASAFLSQNLALYTSQLCTSFEMLVQLAQEQHQLNAPIYACKKYVCERICTCCEMILNLMNDSNPSLEKETCERENHFVYRMDLALDVILEIPSKTHEQQLSECTTELWLRLEDVFSHAMAITQVCQPYNFKAITGSCQSIVLEYEKLKQQLLSETQALYRLERKVNIAVLTLAMEVFSNPYITLKKLVMTCGNSLSAKRRSKSDLNDLIEDFDQFFDQTMQIGIFAIACCKDKNRNNKIRNCLAGFESLETELISAIISFYLHPDNKEMRSSVKLLTMQWQLEMNKFQNAVNLIINSAAFCQVVMDSLQERITAISDCLDNREPVTQLQVQGIVQRASALSSQVTAIVNDIGTENIDRQTIMMTRELKAAIFEANTAAKTLLVENATEPQQLRVIKRCELILNVVQRLQSALATIMNNTTHEKTVRGQGDSIHGSISNAMNFPSTIYGLPRDENSLVYIRTPYTVKTHKSQVSIQPANSTVQKPSDLSYLIPYIKNGRTLRSEHSIMYTPHKNKNVTEVAVKNEMSLRNLSSIRQHLFSRDSFSIHVDFDIAEESMDLTAALEKITSSSTSENATFSSCQFSKVENVSSGSVNKELVFNIVEKLSQTVRPETESLSKSAITEKMSECAISGGGDASLIMESRQKLSSVRSPDNKIQKSTSGQHEKVRHSAVTENSLHTSELDPSQFAEQNMDAVAIHTSDPPQGEDAITSAMKICRICLLDNLMMRDLFAENEVASLSVKAMSFANVKMLPGDGLPTQVCCMCADKLESAYEFKLQVEQADNVLREKLVGGIIKDELFLNEVEIHLDAEKNNGLEEMNDSADYESTDTLPVETETDKNFLKNQLIILEAEKLAETDGIQQDSEQDNLQESIEEELQQELASSEDMSDAIDESRDEVSSNKNIIRSCTDTIPTDEHNYIMQQQCIILHTEQFFHKKMQETVSEFKHEITKYEESLSEQNQENLSEQNQENLSEQNQENQSEQNQEIQAEQNQEIPTQQIHETLAEQTEETPVQNAQAEQENQTEQNQNQKMELLQNEVLKNDTNEPVVEESPQNETRRSKRRLARRIFTERDSDEENYFENLNLSSRLKKVQADKTEKIFFMCYLCDKQFLSKSVLKEHMHSHEEVRKTLSLKKTPEKPQSADQRFRRENAEYMYIISFTKHIKQHEREGQEAKEDSMSLEMFHEDDYSLDLDNGNKSDVECRKQKRGSTVYDDVASDNDQDKKRKRSLIEEFTCNKCPEKFDTKRGLQKHSLTHVSFKCSVCNEEYDTLEQLKNHRTKHVIEGVLTEQDLEEDMKQMIKCEENDDNSKNIKDGENSESVEITKELKCSICSITFSRKKALSRHMQTTHSDTHSYECKICCQQFARKDFLRRHAEQHARVKTYKCTQCNKTFGNELTMRNHLVATNHKTFIQGQEYDPNKRIKRVAARAAQKIIDKIKTEDGLEDYDDNTDYDVKLDKHYVIKHDAKKYRYKEFECATCNKRYCLKQALARHMEQHVKKEKAEKTMEKAAEKQKKTALEKKEAQKSNTDDNDGDNNSDFESGLDWPVDSHECTTCKKQYSTKKSLLRHQLLHEEPNFECDICSIKFYRKDKLKAHYDKCAEKNPDQVRKCNICGDSFENNEILREHRAKHVTEGILTEEDLRDTEPKSEEKRLNDKMTRKRRTDIVGLECTECNKQYTSRKGLLRHIQVHEGKKYLCEICPKKFYRREHLKIHVAKHNMIKPYKCTRCSKRFIKEEQLNNHLPKHDRTFKKNKETDSSKRFLCEICSKSFTQSTTLLAHLRAHKGIKPYVCEVCSRPFTTNAYLKMHMRTHTQERPYICQYCSRAFARADTLANHLTSHTGEAKYHCKCCPKNFRRLKSLKEHMFIHTGQRPYECPTCDRKFNNNGSRYAHSKRCKQNLLQNQNRAQQVIQQTQQQQQQQQLQHQHQHQPQQVQIQMQPEPHPVRLHQTTIGQAQVIKAQNIKTIAIARQAEPTVTTQHQVMQHQEILMPLILPLTVTLADVGEEVILPEGTKIFTTS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00016195; iTF_01261968; iTF_00417766;
90% Identity: iTF_00016195; iTF_01261968;
80% Identity: -