Basic Information

Insect: Cyphomyrmex costatus
Gene Symbol: -
Assembly: GCA_001594065.1
Location: NW:5598787-5608668[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 0.27 17 5.5 2.6 1 23 1293 1315 1293 1315 0.97

2 18 0.0013 0.078 12.9 0.6 2 23 1349 1370 1348 1370 0.97

3 18 0.051 3.2 7.8 0.2 5 23 1456 1474 1455 1474 0.95

4 18 0.00041 0.025 14.4 0.8 1 23 1477 1499 1477 1499 0.98

5 18 0.00014 0.0089 15.9 3.3 1 23 1552 1574 1552 1574 0.96

6 18 0.00056 0.035 14.0 0.7 1 21 1580 1600 1580 1604 0.92

7 18 2.5e-05 0.0015 18.3 1.1 1 23 1671 1693 1671 1693 0.97

8 18 0.00036 0.022 14.6 5.1 1 23 1729 1751 1729 1751 0.97

9 18 0.00066 0.041 13.8 0.8 1 20 1756 1775 1756 1777 0.94

10 18 0.066 4.1 7.5 0.6 2 23 1788 1809 1788 1809 0.97

11 18 0.00013 0.0078 16.0 0.5 2 23 1846 1867 1845 1867 0.96

12 18 9.2e-05 0.0057 16.5 1.9 1 23 1872 1894 1872 1894 0.95

13 18 0.0017 0.1 12.5 1.7 1 20 1900 1919 1900 1922 0.93

14 18 6.9e-06 0.00043 20.0 0.4 1 23 1938 1960 1938 1960 0.95

15 18 7.7e-07 4.7e-05 23.0 0.6 1 23 1966 1988 1966 1988 0.98

16 18 6.1e-05 0.0038 17.0 0.2 1 23 1994 2016 1994 2016 0.97

17 18 0.036 2.2 8.3 6.9 1 23 2022 2044 2022 2044 0.96

18 18 0.0077 0.47 10.4 0.6 1 20 2050 2069 2050 2071 0.90

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	0.27	17	5.5	2.6	1	23	1293	1315	1293	1315	0.97
2	18	0.0013	0.078	12.9	0.6	2	23	1349	1370	1348	1370	0.97
3	18	0.051	3.2	7.8	0.2	5	23	1456	1474	1455	1474	0.95
4	18	0.00041	0.025	14.4	0.8	1	23	1477	1499	1477	1499	0.98
5	18	0.00014	0.0089	15.9	3.3	1	23	1552	1574	1552	1574	0.96
6	18	0.00056	0.035	14.0	0.7	1	21	1580	1600	1580	1604	0.92
7	18	2.5e-05	0.0015	18.3	1.1	1	23	1671	1693	1671	1693	0.97
8	18	0.00036	0.022	14.6	5.1	1	23	1729	1751	1729	1751	0.97
9	18	0.00066	0.041	13.8	0.8	1	20	1756	1775	1756	1777	0.94
10	18	0.066	4.1	7.5	0.6	2	23	1788	1809	1788	1809	0.97
11	18	0.00013	0.0078	16.0	0.5	2	23	1846	1867	1845	1867	0.96
12	18	9.2e-05	0.0057	16.5	1.9	1	23	1872	1894	1872	1894	0.95
13	18	0.0017	0.1	12.5	1.7	1	20	1900	1919	1900	1922	0.93
14	18	6.9e-06	0.00043	20.0	0.4	1	23	1938	1960	1938	1960	0.95
15	18	7.7e-07	4.7e-05	23.0	0.6	1	23	1966	1988	1966	1988	0.98
16	18	6.1e-05	0.0038	17.0	0.2	1	23	1994	2016	1994	2016	0.97
17	18	0.036	2.2	8.3	6.9	1	23	2022	2044	2022	2044	0.96
18	18	0.0077	0.47	10.4	0.6	1	20	2050	2069	2050	2071	0.90

Sequence Information

Coding Sequence: atgGAATTGAAGACGAGACAAACGAAGAAGTTGTTGGAGCTTTTGGAGCAACAAataaacaaattgtatttattgctGACTACTGCTTCTATTAATCCGTCAGAAATTTTAGTCACAAAATCATTACTCCACGAGCAACTGCATCTTTTAACTCAgagattcaataatttaagCGATGATAATTGCGACTGTGAAGAggcaaatgtaaaatttgctGAGACAGtaacaaatttgaaatatacttcTCTATTGAAAAATGTTGAGGAACATATTAAGGATATTAAATGCGATAATATTGATAGCAATACAGCCAGATATAAAATGGAATCAttgcttaataattttatatcagcTTTACAAGCGTTGGAAGATTTAGAATGTTTACCATTGAAACAGAGACTTCAGGATTGTCTGGATTATGTTAAAGAAATGAGCACAGCAAATGAGATTGAGGATCTTCAAAACATAAAAGAATTAGGTACTTCGATACTAGAGATACTCGAACCACTACAGAATTACAGAAAAAGTTTAGTGTCTGCTTTTCTGTCACAGAATTTagctttatatatttctcaattgTGCATATCATTTGAAATGCTAGTACAACTAGCTCAGGAACAGCATCAGTTAAATGCACCAATTTATgCTTGCAAGAAATATGTTTGTGAAAGAATATGCACTTGCTGTGAAATGATATTGAACTTGATGAATGATTCAAATCCATCGCTGGAAAAGGAAACttgcgagagagagaatcatTTCGTTTACagAATGGATTTGGTATTAGACGTTATATTAGAAATACCAAGCAAAATGCATGAAGAGCAGCTGTCTGAATGCACAGAGCTGTGGTTGAGACTGGAAGATGTCTTCTCTCATGCTATGGCAATTACTCAAGTGTGTCAgccatataattttaaagccATAACTGGTTCATGCCAATCTATAGTGTtggaatatgaaaaattaaaacaacaattattcTCGGAGACTCCAGATCCGGCGTTAAATAACTTGTTTATGCATACCTTAACCGACGCTCTTTATCGTTTGGAACGTAAAGTCAATATAGCGGTACTAACGCTCGCAATGGAAGTATTCAGTAATCCTTACATTACTTTGAAAAAACTCGTTATGACGTGCGGAAATTCATTAAGCGCAAAAAGAAGGTCGAAGAgtgatttaaataatcttatagAAGATTTTGACCAATTCTTTGATCAAACTATACAAATTGGAATATTTGCAATTGCTTGTTGCAAAGACAAGAATCgaaATAACAAAATTCGTAATTGCCTCGCAGGATTTGAATCCTTAGAAACTGAATTAATTTCTGCTATAACTTCCTTCTATTTGCATCcagataataaagaaatgcGTTCGAGTGTTAAATTATTGACTACGCAATGGCAGTTAGAGATGAATAAGTTTCAGAATGCTGTAAATCTCATTATAAATTCTGCTGCTTTCTGTCAAGTAGTTATGGATAGTCTTCAAGAACGTATAACGGCAATCTCAGATTGTCTAGATAACAGAGAGCCAGTAACGCAACTTCAAGTGCAAGGTATCGTTCAGCGTGCTTCAGCTTTGTCTAGTCAAGTTACAGCGATTGTAAATGACATTGGCACTGAAAACATTGATCGTCAAACAATAATGATGACGAGAGAATTGAAAGCAGCTATATTTGAAGCCAACGCTGCTGCCAAAACTCTTCTGGTGGAGAACGCAACAGAGCCTCAACAATTGCGAGTGATAAAACGATgtgaattaatattgaatgtcGTTCAAAGATTACAGCCTGTTTTAGCTATAATTATGAACAATACGACGCGTGAAAAATCTGTGAGAAGTCAAGGAGATTCCAGTCATGGTACATGTGTTACAGGCAGCGTATCAAATGTCATGAACTTTTCATCGACAATTTATGGTTTGCCGCGCGATGAAAATAGTCTAGTTTATATTAGAACACCCTATACAGTAAAAATGCATAAACCACAAGTGTCCATTCAAACGGCAAACAGTACAGTGCAGAAACCGTCGGATCTATCATATTTGATACCTTACATAAAGAACGGTCGTACATTGCGTAGTGAGCACTCCATCATGTACACACCCAATAAAAACAAGAACTTAACAGAAGCAGCTGTTAAAAATGAGATGTTTCTTAGGAATCTATCTAGCATTAGACAACATCTTTTTAGCAGAGATAGCTTTAGTATTCATGTCGACTTTGATATAGCCGAAGAAAGCATGGATTTAACAGCTGCTTTAGAGAAGATAACTTCGTCGTCTACGGAAAATGCAACGTTCTCTTCGTGCCAATTCTCAAAAGTAGAAAATGTATCTTCGGGAAGCGTGAACAAGGAATCGGTTATCAATATCGTAGAAAAACTATGTCAAACTGTAAGACCAGAAACGGAAAGTTGTTTGAGTAAATCTGTGATAACAGAGAAGATGAGTGAATGTGCCATATCTGGTGGCGGTGATGCGTCCTTAATCATGGAATCGTGTCAAAAACTCAATAGCGTTCGATCTCCAGACAATAAGATACAAAAGTCAACCTCGGAGAAACATGAGTGGTGGGTGAAAGAAGACGGTGTGCTGGTCCAGCGAGAAAAAACGTCGAGCAGATCAATTCGTTTTTACATCGGTTCAAGTCAGTTCGTCGAGCGAAACATGGACGCCGTGGCGATACGTACATCGAGTCCGCCGCAGGGCGAGGACGCGATCGCGTCCGCTATGAAGATATGCCGCGTCTGCCTGCTCGACAATCTGATGATGCGTGATCTCTTCGCAGAGAGCGAGGTCGCATCTCTATCGGCGAAGGCGATGAGCTTTGCCAACGTTAAGATGTTACCAGGCGACGGTTTACCAACACAGGTGTGTTGTATGTGCGCTGACAAGTTGGAGTCGGCATACGAGCTTAAGTTACAAGTAGAGCAAGCTAACAATGTTCTCCGAGAAAAGTTTATGGGAAGAATGAAGGATGATTTGTTTCTTAATGAGGTTGATATGCACTTGCATGCTGAGAAGAATAATGGTTTGGAAGAGATAAATGACAGTGCTGATTATGGGTCTACTGGTACACTGCCAGTTGAGACAGAAACTGACAAGAACTTTctgaaaaatcaattaataattttggaaGCTGAAAAATTGGCAGAGACAGGTGAGATGCAACAAGATGCAGAACAAGATAGCTTGCAAGAAAGTATCGAGGAACAATTGCAGCAAGAATTAGCTAGTTCGGAAGGCAATGATATATCAGATGCTATCGATGAATCTAGGGATGAAGTACTTTCCGATGAGAAGAACATTCAAAATTGTACAGATACGGTTTCAACGGAaggacataattttataatgcaacaacaatgtattatatttcatactgATCAATTCTCCttccataaaaaaatacagGAGGAGGATGTATCAGAATTGAAACATGATACAGTGAAATACGAAGAGTCACTATCTGAACAAAATCAAGAAAATCAGTCTGAGCAAAACCAAGAAATTCAAGCTGAACAAAATCAAGAAATTCTAACTCAGCAAATCTACGAGACTTTGGCTGAACAAAATGAAGAGTCTCGAGTAGAAAAATCTGAAGATAAGCAAGAGAGTCAAGCtaaacaaaatcaaaatgacGAAATGGAATTATTACAGACAGAAGTATCCAAAGATGATACTAATGATGAGACAAGTGTACCAGTGGTGAGACAAGAATTACCCCAGAATGAAACTAGAAGAAGTAAACGATTGGCTCGTCGAACACTTGCCGAACGAGATTCCGATGAGGAGAATTACTTTGAAAATCTAAATCTTAGTTCGCGATTGAAAAAAGCGCAGGCAAATAAGGcagaaaagttttttttcatatgttACTTGTGCGATGAACAGTTCCTCTCAAAGTGCGTTCTGAAACAGCATATGCAGTCCCATGAAGAAGTAAGGAGAACATTGTCTGTGAAGAAAATGCTGAAGAAATCGCGGACGTGCCTTCCAGTCGTGCCAACGCCGTCGTCAGGAAGGAAAGCCAACAAGTGCCCTTATTGTGGTAAAGAATATCAGTACATAATCTCATTTAATAAACACATTAAACAACATGAGCGAGAGCATCTGAAAACAATTCCGCTTGCTAAACATGGTAAGCAACATGAACGAGAGCAGCAGGAAACGAATGAAGATCCGATATTTATCGAGATATCGTTTGAAGGAGAGGAGCACAATCTAGACTCTGATAACGACAACAAATCCAATGTTGAATGTGAGAAACGGAAAAGAGAAAGTACAGCCGTCGCGAGCGACAACGATCAGAACaagagaaaaaagtttaatctTATTGAAGAATTTACATATGACAAATGTCCAGAAAAATTCGATACAAAGCAAGGTTTGCAAAATCATTCATTGACGCATGTTAACTTCACGTGCAGTGTGTGTGACGAGGAATACGAAACTCTAGAACAACTAAAAAATCACCGAACGAAGCACGTGATCCAAGATATATTCACTGAGCAAGATTTGGAAGAAGATATGAAGCAAATGGCCCAGAACATCAAGGACAATAATGAAAACACCAAAAACATCAAAAGTACAGAGAACAAGAAAGCGCTCTCCAGACATATAGAGACAACACAATCCTATTCTTACAAATGCAAGATATgctatcaaaaatttacaCGGAAGGATTTCCTACGCAGGCATGCTGAGCAGCATGCACGACTGAAGAATTACAAATGCACCCAATGTAACAAGAGTTTCGGTAACGAGCTTACGTTGAGAAATCACTTGATCGCCACAAATCACAAGACATTTATACAGGGGCAGGAATACGATCCCAATAAGCGTATAAAGCGCATGGCAGCGACAGCAGCACAAAAAATTATCGACAAGATCAAGATTGAGGACGGACTCGAAGACTacgacgatgatgacgatgatAATACAGAGTACGATTTTACTCAATTGGATAGGTACTATCAACGTAAGCGCAGTGCAAAGGAATTCGTGTGTGCGACCTGTAACAAGAACTTTAACTCAAAGCAAGCGTTGACGAAGCACATGGAGCAGCATGTAAAGGAGGAGAAAGCAGAGAAAACAGTggaaaaacagaaaaacaaGGGCGATAACAATGACGACTCCGACTTTGAGAGTGGTCTTGATTGGCCAATGGACAACCACGAATGCACCACGTGCAAGAAGAAATACAGTACGAAAAAGTCGTTACTGCGCCATCAACTATTACATGAGGAGCCAAATTTTGAATGTGATATCTGCAATGTTAAATTCTATCGCAAAGATAAACTGAAGGTGCACTATGATAAGTGCTCGGAAAAGAATCCCAATCAGGTGAGGAAGTGTAACATCTGTGGCGACAGTTTTGAAAACAATAAGATTCTGCGCGAGCATAGGATCAAGCACGTCACTGAGGGTATCCTAACGGAGGAGGATCTGATAGACATCGAGCCTGAAGAAAAGAGAATACGGGATAGAATGCCTCGTAAGAGGAGGACCGATATTGTGGGGCTCGAGTGTGTCGAATGCAAGAAACGATATACATCCAGGAAGGGCTTGTTGCGACACATTCAGATTCACGAGGGCAAGAAGTACTTGTGCGAAATGTGTCCAAAGAAATTCTATCGGCGGGAACACCTGAAGATTCACGTAGCAAAGCACAACATGATTAAACCATATAAGTGCACCCGTTGCTCCAAGCGCTTCATCAAGGAGGAGCAGCTCAACAATCATCTACCTAAGCATGATCGCACTTTTAAGAAGAACAAGGAAGCCGATAGCTCGAAAAGATTCCTCTGTGAGATTTGCAGTAAGAGCTTTACGCAATCGACAACACTGATAGCGCATCTGCGCGCTCATAAGGGTATCAAACCGTTTGTATGCGAAGTATGCTCCAGGCCATTCACCACTAATGCTTACTTGAAGATGCATATGCGCACGCACACGCAGGAACGTCCGTATATTTGCCAATATTGTTCACGAGCGTTTGCGCGTGCCGACACCTTAGCGAATCATCTGACGTCGCATACTGGCGAAGCTAAGTACCATTGTAAGTGCTGTCCGAAGAACTTCCGACGATTGAAATCATTGAAGGAACACATGTTTATTCATACGGGTCAACGACCTTACGAGTGTCCAACTTGCGACAGAAAGTTCAACAATAATGGCAGTCGCTACGCGCACAGCAAGCGCTGCAAACAGAATCTTCTGCAGAATCAAAATCGGGCGCAACAGGTGATCCAGCAGACACAACAGCAATCGCAACAACAGCATCAACAACAAGAGCATCAGCCACAGCAAGTGCAAATACATGTGCAGCAGTCAGAACCGCATCCAGTTAGATTGCATCAAACCACGATCGGCCAGGCACAAGTAATCAAGACGCAAAACATCAAAACGATTGCTATAGCGAGACAGGCTGACCCTACGATAACCACAACGCAACAAGTTGTGCAGCATCAGGAGATACTAATGCCTCTAATCCTGCCACTTACCGTTACTCTTGCTGATGTAGGCGAAGAGGTGATATTACCTGAaggtacaaaaatatttaccacCTCTTAA
Protein Sequence: MELKTRQTKKLLELLEQQINKLYLLLTTASINPSEILVTKSLLHEQLHLLTQRFNNLSDDNCDCEEANVKFAETVTNLKYTSLLKNVEEHIKDIKCDNIDSNTARYKMESLLNNFISALQALEDLECLPLKQRLQDCLDYVKEMSTANEIEDLQNIKELGTSILEILEPLQNYRKSLVSAFLSQNLALYISQLCISFEMLVQLAQEQHQLNAPIYACKKYVCERICTCCEMILNLMNDSNPSLEKETCERENHFVYRMDLVLDVILEIPSKMHEEQLSECTELWLRLEDVFSHAMAITQVCQPYNFKAITGSCQSIVLEYEKLKQQLFSETPDPALNNLFMHTLTDALYRLERKVNIAVLTLAMEVFSNPYITLKKLVMTCGNSLSAKRRSKSDLNNLIEDFDQFFDQTIQIGIFAIACCKDKNRNNKIRNCLAGFESLETELISAITSFYLHPDNKEMRSSVKLLTTQWQLEMNKFQNAVNLIINSAAFCQVVMDSLQERITAISDCLDNREPVTQLQVQGIVQRASALSSQVTAIVNDIGTENIDRQTIMMTRELKAAIFEANAAAKTLLVENATEPQQLRVIKRCELILNVVQRLQPVLAIIMNNTTREKSVRSQGDSSHGTCVTGSVSNVMNFSSTIYGLPRDENSLVYIRTPYTVKMHKPQVSIQTANSTVQKPSDLSYLIPYIKNGRTLRSEHSIMYTPNKNKNLTEAAVKNEMFLRNLSSIRQHLFSRDSFSIHVDFDIAEESMDLTAALEKITSSSTENATFSSCQFSKVENVSSGSVNKESVINIVEKLCQTVRPETESCLSKSVITEKMSECAISGGGDASLIMESCQKLNSVRSPDNKIQKSTSEKHEWWVKEDGVLVQREKTSSRSIRFYIGSSQFVERNMDAVAIRTSSPPQGEDAIASAMKICRVCLLDNLMMRDLFAESEVASLSAKAMSFANVKMLPGDGLPTQVCCMCADKLESAYELKLQVEQANNVLREKFMGRMKDDLFLNEVDMHLHAEKNNGLEEINDSADYGSTGTLPVETETDKNFLKNQLIILEAEKLAETGEMQQDAEQDSLQESIEEQLQQELASSEGNDISDAIDESRDEVLSDEKNIQNCTDTVSTEGHNFIMQQQCIIFHTDQFSFHKKIQEEDVSELKHDTVKYEESLSEQNQENQSEQNQEIQAEQNQEILTQQIYETLAEQNEESRVEKSEDKQESQAKQNQNDEMELLQTEVSKDDTNDETSVPVVRQELPQNETRRSKRLARRTLAERDSDEENYFENLNLSSRLKKAQANKAEKFFFICYLCDEQFLSKCVLKQHMQSHEEVRRTLSVKKMLKKSRTCLPVVPTPSSGRKANKCPYCGKEYQYIISFNKHIKQHEREHLKTIPLAKHGKQHEREQQETNEDPIFIEISFEGEEHNLDSDNDNKSNVECEKRKRESTAVASDNDQNKRKKFNLIEEFTYDKCPEKFDTKQGLQNHSLTHVNFTCSVCDEEYETLEQLKNHRTKHVIQDIFTEQDLEEDMKQMAQNIKDNNENTKNIKSTENKKALSRHIETTQSYSYKCKICYQKFTRKDFLRRHAEQHARLKNYKCTQCNKSFGNELTLRNHLIATNHKTFIQGQEYDPNKRIKRMAATAAQKIIDKIKIEDGLEDYDDDDDDNTEYDFTQLDRYYQRKRSAKEFVCATCNKNFNSKQALTKHMEQHVKEEKAEKTVEKQKNKGDNNDDSDFESGLDWPMDNHECTTCKKKYSTKKSLLRHQLLHEEPNFECDICNVKFYRKDKLKVHYDKCSEKNPNQVRKCNICGDSFENNKILREHRIKHVTEGILTEEDLIDIEPEEKRIRDRMPRKRRTDIVGLECVECKKRYTSRKGLLRHIQIHEGKKYLCEMCPKKFYRREHLKIHVAKHNMIKPYKCTRCSKRFIKEEQLNNHLPKHDRTFKKNKEADSSKRFLCEICSKSFTQSTTLIAHLRAHKGIKPFVCEVCSRPFTTNAYLKMHMRTHTQERPYICQYCSRAFARADTLANHLTSHTGEAKYHCKCCPKNFRRLKSLKEHMFIHTGQRPYECPTCDRKFNNNGSRYAHSKRCKQNLLQNQNRAQQVIQQTQQQSQQQHQQQEHQPQQVQIHVQQSEPHPVRLHQTTIGQAQVIKTQNIKTIAIARQADPTITTTQQVVQHQEILMPLILPLTVTLADVGEEVILPEGTKIFTTS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00015546;
90% Identity: -
80% Identity: -