Basic Information

Insect: Acrocera orbiculus
Gene Symbol: -
Assembly: GCA_947359355.1
Location: OX375758.1:36023034-36026462[-]

Transcription Factor Domain

TF Family: zf-GAGA
Domain: zf-GAGA domain
PFAM: PF09237
TF Group: Zinc-Coordinating Group
Description: Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 0.44 1.4e+03 -0.7 0.0 21 43 43 65 39 70 0.84

2 18 0.00011 0.35 10.9 0.2 21 50 71 100 63 103 0.88

3 18 0.44 1.4e+03 -0.7 0.0 21 43 168 190 164 195 0.84

4 18 0.00011 0.35 10.9 0.2 21 50 196 225 188 228 0.88

5 18 0.44 1.4e+03 -0.7 0.0 21 43 293 315 289 320 0.84

6 18 0.00013 0.43 10.6 0.3 21 49 321 349 314 353 0.88

7 18 0.44 1.4e+03 -0.7 0.0 21 43 418 440 414 445 0.84

8 18 0.00011 0.35 10.9 0.2 21 50 446 475 438 478 0.88

9 18 0.44 1.4e+03 -0.7 0.0 21 43 543 565 539 570 0.84

10 18 0.00013 0.43 10.6 0.3 21 49 571 599 564 603 0.88

11 18 0.33 1.1e+03 -0.3 0.0 21 43 668 690 664 695 0.85

12 18 0.00015 0.51 10.4 0.3 21 48 696 723 689 727 0.89

13 18 0.44 1.4e+03 -0.7 0.0 21 43 793 815 789 820 0.84

14 18 0.00013 0.43 10.6 0.3 21 49 821 849 814 853 0.88

15 18 0.25 8.1e+02 0.1 0.0 21 43 918 940 905 945 0.84

16 18 0.00016 0.54 10.3 0.2 21 48 946 973 941 977 0.89

17 18 0.25 8.2e+02 0.1 0.0 21 43 1043 1065 1030 1070 0.84

18 18 0.00012 0.41 10.7 0.2 21 49 1071 1099 1063 1103 0.88

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	0.44	1.4e+03	-0.7	0.0	21	43	43	65	39	70	0.84
2	18	0.00011	0.35	10.9	0.2	21	50	71	100	63	103	0.88
3	18	0.44	1.4e+03	-0.7	0.0	21	43	168	190	164	195	0.84
4	18	0.00011	0.35	10.9	0.2	21	50	196	225	188	228	0.88
5	18	0.44	1.4e+03	-0.7	0.0	21	43	293	315	289	320	0.84
6	18	0.00013	0.43	10.6	0.3	21	49	321	349	314	353	0.88
7	18	0.44	1.4e+03	-0.7	0.0	21	43	418	440	414	445	0.84
8	18	0.00011	0.35	10.9	0.2	21	50	446	475	438	478	0.88
9	18	0.44	1.4e+03	-0.7	0.0	21	43	543	565	539	570	0.84
10	18	0.00013	0.43	10.6	0.3	21	49	571	599	564	603	0.88
11	18	0.33	1.1e+03	-0.3	0.0	21	43	668	690	664	695	0.85
12	18	0.00015	0.51	10.4	0.3	21	48	696	723	689	727	0.89
13	18	0.44	1.4e+03	-0.7	0.0	21	43	793	815	789	820	0.84
14	18	0.00013	0.43	10.6	0.3	21	49	821	849	814	853	0.88
15	18	0.25	8.1e+02	0.1	0.0	21	43	918	940	905	945	0.84
16	18	0.00016	0.54	10.3	0.2	21	48	946	973	941	977	0.89
17	18	0.25	8.2e+02	0.1	0.0	21	43	1043	1065	1030	1070	0.84
18	18	0.00012	0.41	10.7	0.2	21	49	1071	1099	1063	1103	0.88

Sequence Information

Coding Sequence: ATGAAACATGAACATGCAAGAAAAACAAGCGAGGGGAGTCAGTTCAATATCACTTATGATTGCAGTATTCGCAAAAAAAGCTTTAATCGGAAAGATAACCTCAAGGCGCATGAAAAACTCCATACAGGTGAAAGGCCATATGAGTGTAATATATGTGGCGTTACTTTTGCTCTAAAAGGAAATTTAACTAAACATAAAATAATCCATACAGAAGAAAGGCCATATATTTGTAACATATGTCACGCTACTTTTCGTTCAAATTCAGGTTTACAAAGACACAAGGGTATCGTGCATAAAGGAAAATCGAAAAGCGAGGGGAATCCGTTCAATTTCCCTGCGGATAATGGAACAAAAAATAATTTTGATTACACAATTATGAAACATGACCATGCAAGAAAAACAAGCGAGGGGAGTCAGTTCAATATCACTTATGATTGCAGTATTCGCAAAAAAAGCTTTAATCGGAAAGATAACCTCAAGGCGCATGAAAAACTCCATACAGGTGAAAGGCCATATGAGTGTAATATATGTGGCGTTACTTTTGCTCTAAAAGGAAATTTAACTAAACATAAAATAATCCATACAGAAGAAAGGCCATATATTTGTAACATATGTCACGCTACTTTTCGTTCAAATTCAGGTTTACAAAGACACAAGGGTATCGTGCATAAAGGAAAATCGAAAAGCGAGGGGAATCCGTTCAATTTCCCTGCGGATAATGGAACAAAAAATAATTTTGATTACACAATTATGAAACATGACCATGCAAGAAAAACAAGCGAGGGGAGTCAGTTCAATATCACTTATGATTGCAGTATTCGCAAAAAAAGCTTTAATCGGAAAGATAACCTCAAGGCGCATGAAAAACTCCATACAGGTGAAAGGCCATATGAGTGCAATATATGTGGCGTTACTTTTGCTCTAAAAGGAAATTTAACTAAACATAAAATAATCCATACAGAAGAAAGGCCATATATTTGTAACATATGTCACGCTACTTTTCGTTCAAATTCAGGTTTACAAAGACACAAGGGTATCGTGCATAAAGAAAAATCGAAAAGTGAGGGGAATCAGTTCAATTTCCCTGCAGATAATGGAACAAAAATTAATTTTGATTACACAATTATGAAACATGAACATGCAAGAAAAACAAGCGAAGGGAGTCAGTTCAATATCACTTATGATTGCAGTATTCGCAAAAAAAGCTTTAATCGGAAAGATAACCTCAAGGCGCATGAAAAACTCCATACAGGTGAAAGGCCATATGAGTGTAATATATGTGGCGTTACTTTTGCTCTAAAAGGAAATTTAACTAAACATAAAATAATCCATACAGAAGAAAGGCCATATATTTGTAACATATGTCACGCTACTTTTCGTTCAAATTCAGGTTTACAAAGACACAAGGGTATCGTGCATAAAGGAAAATCGAAAAGTGAGGGGAATCCGTTCAATTTCCCTGCGGATAATGGAACAAAAAATAATTTTGATTACACAATTATGAAACATGACCATGCAAGAAAAACAAGCGAGGGGAGTCAGTTCAATATCACTTATGATTGCAGTATTCGCAAAAAAAGCTTTAATCGGAAAGATAACCTCAAGGCGCATGAAAAACTCCATACAGGTGAAAGGCCATATGAGTGCAATATATGTGGCGTTACTTTTGCTCTAAAAGGAAATTTAACTAAACATAAAATAATCCATACAGAAGAAAGGCCATATATTTGTAACATATGTCACGCTACTTTTCGTTCAAATTCAGGTTTACAAAGACACAAGGGTATCGTGCATAAAGAAAAATCGAAAAGTGAGGGGAATCAGTTCAATTTCCCTGCAGATAATGGAACAAAAATTAATTTTGATTACACAATTATGAAACATGAACATGCAAGAAAAACAAGCGAAGGGAGTCAGTTCAATATCACTTATGATTGCAGTATTCGCAAAAAAAGCTTTAATCGGAAAGATAACCTCAAGGCGCATGAAAAACTCCATACAGGTGAAAGGCCATATGAGTGCAATATATGTGGCGTTACTTTTGCTCTAAAAGCAAATTTAACTAAACATAAAATAATCCATACAGAAGAAAGGCCATATATTTGTAACATATGTCACGCTACTTTTCGTTCAAATTCAGGTTTACAAAGACACAAGGGTATCGTGCATAAAGAAAAATTGAAAAGCGAGGGGAATCAGTTCAATTTCCCTGCAGATAATGGAACAAAAATTAATTTTGATTACACAATTATGAAACATGAACATGCAAGAAAAACAAGCGAAGGGAGTCAGTTCAATATCACTTATGATTGCAGTATTCGCAAAAAAAGCTTTAATCGGAAAGATAACCTCAAGGCGCATGAAAAACTCCATACAGGTGAAAGGCCATATGAGTGTAATATATGTGGCGTTACTTTTGCTCTAAAAGGAAATTTAACTAAACATAAAATAATCCATACAGAAGAAAGGCCATATATTTGTAACATATGTCACGCTACTTTTCGTTCAAATTCAGGTTTACAAAGACACAAGGGTATCGTGCATAAAGAAAAATCGAAAAGTGAGGGGAATCAGTTCAATTTCCCTGCAGATAATGGAACAAAAATTAATTTTGATTACACAATTATGAAACATGACCATGCAAGAAAAACAAGCGAGGGGAGTCAGTTCAATATCACTTATGATTGCAGTATTCGCAAAAAAAGCTTTAATCGGAAAGATAACCCCAAGGCGCATGAAAAACTCCATACAGGTGAAAGGCCATATGAGTGCAATATATGTGGCGTTACTTTTGCTCTAAAAGCAAATTTAACTAAACATAAAATAATCCATACAGAAGAAAGGCCATATATTTGTAACATATGTCACGCTACTTTTCGTTCAAATTCAGGTTTACAAAGACACAAGGGTATCGTGCATAAAGAAAAATTGAAAAGCGAGGGGAATCCGTTCAATTTCCCTGCAGATAATGGAACAAAAAATAATTTTGATTACACAATTATGAAACATGACCATGCAAGAAAAACAAGCGAGGGGAGTCAGTTCAATATCACTTATGATTGCAGTATTCGCAAAAAAAGCTTTAATCGGAAAGATAACCCCAAGGCGCATGAAAAACTCCATACAGGTGAAAGGCCATATGAGTGCAATATATGTGGCGTTACTTTTGCTCTAAAAGCAAATTTAACTAAACATAAAATAATCCATACAGAAGAAAGGCCATATATTTGTAACATATGTCACGCTACTTTTCGTTCAAATTCAGGTTTACAAAGACACAAGGGTATCGTGCATAAAGAAAAATCGAAAAGCGAGGGGAATCAGTTCAATTTCCCTGCAGATAATGGAAAAAAAATTAATTTTGATTACACAATTATGAAACATGACCATGCAAGAAAAACAAGCGAGGGGAGTCAAAATAGATATTAG
Protein Sequence: MKHEHARKTSEGSQFNITYDCSIRKKSFNRKDNLKAHEKLHTGERPYECNICGVTFALKGNLTKHKIIHTEERPYICNICHATFRSNSGLQRHKGIVHKGKSKSEGNPFNFPADNGTKNNFDYTIMKHDHARKTSEGSQFNITYDCSIRKKSFNRKDNLKAHEKLHTGERPYECNICGVTFALKGNLTKHKIIHTEERPYICNICHATFRSNSGLQRHKGIVHKGKSKSEGNPFNFPADNGTKNNFDYTIMKHDHARKTSEGSQFNITYDCSIRKKSFNRKDNLKAHEKLHTGERPYECNICGVTFALKGNLTKHKIIHTEERPYICNICHATFRSNSGLQRHKGIVHKEKSKSEGNQFNFPADNGTKINFDYTIMKHEHARKTSEGSQFNITYDCSIRKKSFNRKDNLKAHEKLHTGERPYECNICGVTFALKGNLTKHKIIHTEERPYICNICHATFRSNSGLQRHKGIVHKGKSKSEGNPFNFPADNGTKNNFDYTIMKHDHARKTSEGSQFNITYDCSIRKKSFNRKDNLKAHEKLHTGERPYECNICGVTFALKGNLTKHKIIHTEERPYICNICHATFRSNSGLQRHKGIVHKEKSKSEGNQFNFPADNGTKINFDYTIMKHEHARKTSEGSQFNITYDCSIRKKSFNRKDNLKAHEKLHTGERPYECNICGVTFALKANLTKHKIIHTEERPYICNICHATFRSNSGLQRHKGIVHKEKLKSEGNQFNFPADNGTKINFDYTIMKHEHARKTSEGSQFNITYDCSIRKKSFNRKDNLKAHEKLHTGERPYECNICGVTFALKGNLTKHKIIHTEERPYICNICHATFRSNSGLQRHKGIVHKEKSKSEGNQFNFPADNGTKINFDYTIMKHDHARKTSEGSQFNITYDCSIRKKSFNRKDNPKAHEKLHTGERPYECNICGVTFALKANLTKHKIIHTEERPYICNICHATFRSNSGLQRHKGIVHKEKLKSEGNPFNFPADNGTKNNFDYTIMKHDHARKTSEGSQFNITYDCSIRKKSFNRKDNPKAHEKLHTGERPYECNICGVTFALKANLTKHKIIHTEERPYICNICHATFRSNSGLQRHKGIVHKEKSKSEGNQFNFPADNGKKINFDYTIMKHDHARKTSEGSQNRY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00014410; iTF_00014200;
90% Identity: iTF_00014410; iTF_00014200;
80% Identity: iTF_00014410; iTF_00014200;