Aorb014812.2
Basic Information
- Insect
- Acrocera orbiculus
- Gene Symbol
- -
- Assembly
- GCA_947359355.1
- Location
- OX375758.1:36023034-36026462[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 27 0.0083 0.65 10.5 0.4 7 23 25 41 19 41 0.88 2 27 7e-06 0.00055 20.1 0.1 1 23 47 69 47 69 0.97 3 27 1.9e-05 0.0015 18.7 0.7 1 23 75 98 75 98 0.92 4 27 0.0083 0.65 10.5 0.4 7 23 150 166 144 166 0.88 5 27 7e-06 0.00055 20.1 0.1 1 23 172 194 172 194 0.97 6 27 1.9e-05 0.0015 18.7 0.7 1 23 200 223 200 223 0.92 7 27 0.0083 0.65 10.5 0.4 7 23 275 291 269 291 0.88 8 27 7e-06 0.00055 20.1 0.1 1 23 297 319 297 319 0.97 9 27 1.9e-05 0.0015 18.7 0.7 1 23 325 348 325 348 0.92 10 27 0.0083 0.65 10.5 0.4 7 23 400 416 394 416 0.88 11 27 7e-06 0.00055 20.1 0.1 1 23 422 444 422 444 0.97 12 27 1.9e-05 0.0015 18.7 0.7 1 23 450 473 450 473 0.92 13 27 0.0083 0.65 10.5 0.4 7 23 525 541 519 541 0.88 14 27 7e-06 0.00055 20.1 0.1 1 23 547 569 547 569 0.97 15 27 1.9e-05 0.0015 18.7 0.7 1 23 575 598 575 598 0.92 16 27 0.0083 0.65 10.5 0.4 7 23 650 666 644 666 0.88 17 27 7.4e-06 0.00058 20.0 0.1 1 23 672 694 672 694 0.97 18 27 1.9e-05 0.0015 18.7 0.7 1 23 700 723 700 723 0.92 19 27 0.0083 0.65 10.5 0.4 7 23 775 791 769 791 0.88 20 27 7e-06 0.00055 20.1 0.1 1 23 797 819 797 819 0.97 21 27 1.9e-05 0.0015 18.7 0.7 1 23 825 848 825 848 0.92 22 27 5.7 4.4e+02 1.5 0.3 7 23 900 916 894 916 0.87 23 27 7.4e-06 0.00058 20.0 0.1 1 23 922 944 922 944 0.97 24 27 1.9e-05 0.0015 18.7 0.7 1 23 950 973 950 973 0.92 25 27 5.7 4.4e+02 1.5 0.3 7 23 1025 1041 1019 1041 0.87 26 27 7.4e-06 0.00058 20.0 0.1 1 23 1047 1069 1047 1069 0.97 27 27 1.9e-05 0.0015 18.7 0.7 1 23 1075 1098 1075 1098 0.92
Sequence Information
- Coding Sequence
- ATGAAACATGAACATGCAAGAAAAACAAGCGAGGGGAGTCAGTTCAATATCACTTATGATTGCAGTATTCGCAAAAAAAGCTTTAATCGGAAAGATAACCTCAAGGCGCATGAAAAACTCCATACAGGTGAAAGGCCATATGAGTGTAATATATGTGGCGTTACTTTTGCTCTAAAAGGAAATTTAACTAAACATAAAATAATCCATACAGAAGAAAGGCCATATATTTGTAACATATGTCACGCTACTTTTCGTTCAAATTCAGGTTTACAAAGACACAAGGGTATCGTGCATAAAGGAAAATCGAAAAGCGAGGGGAATCCGTTCAATTTCCCTGCGGATAATGGAACAAAAAATAATTTTGATTACACAATTATGAAACATGACCATGCAAGAAAAACAAGCGAGGGGAGTCAGTTCAATATCACTTATGATTGCAGTATTCGCAAAAAAAGCTTTAATCGGAAAGATAACCTCAAGGCGCATGAAAAACTCCATACAGGTGAAAGGCCATATGAGTGTAATATATGTGGCGTTACTTTTGCTCTAAAAGGAAATTTAACTAAACATAAAATAATCCATACAGAAGAAAGGCCATATATTTGTAACATATGTCACGCTACTTTTCGTTCAAATTCAGGTTTACAAAGACACAAGGGTATCGTGCATAAAGGAAAATCGAAAAGCGAGGGGAATCCGTTCAATTTCCCTGCGGATAATGGAACAAAAAATAATTTTGATTACACAATTATGAAACATGACCATGCAAGAAAAACAAGCGAGGGGAGTCAGTTCAATATCACTTATGATTGCAGTATTCGCAAAAAAAGCTTTAATCGGAAAGATAACCTCAAGGCGCATGAAAAACTCCATACAGGTGAAAGGCCATATGAGTGCAATATATGTGGCGTTACTTTTGCTCTAAAAGGAAATTTAACTAAACATAAAATAATCCATACAGAAGAAAGGCCATATATTTGTAACATATGTCACGCTACTTTTCGTTCAAATTCAGGTTTACAAAGACACAAGGGTATCGTGCATAAAGAAAAATCGAAAAGTGAGGGGAATCAGTTCAATTTCCCTGCAGATAATGGAACAAAAATTAATTTTGATTACACAATTATGAAACATGAACATGCAAGAAAAACAAGCGAAGGGAGTCAGTTCAATATCACTTATGATTGCAGTATTCGCAAAAAAAGCTTTAATCGGAAAGATAACCTCAAGGCGCATGAAAAACTCCATACAGGTGAAAGGCCATATGAGTGTAATATATGTGGCGTTACTTTTGCTCTAAAAGGAAATTTAACTAAACATAAAATAATCCATACAGAAGAAAGGCCATATATTTGTAACATATGTCACGCTACTTTTCGTTCAAATTCAGGTTTACAAAGACACAAGGGTATCGTGCATAAAGGAAAATCGAAAAGTGAGGGGAATCCGTTCAATTTCCCTGCGGATAATGGAACAAAAAATAATTTTGATTACACAATTATGAAACATGACCATGCAAGAAAAACAAGCGAGGGGAGTCAGTTCAATATCACTTATGATTGCAGTATTCGCAAAAAAAGCTTTAATCGGAAAGATAACCTCAAGGCGCATGAAAAACTCCATACAGGTGAAAGGCCATATGAGTGCAATATATGTGGCGTTACTTTTGCTCTAAAAGGAAATTTAACTAAACATAAAATAATCCATACAGAAGAAAGGCCATATATTTGTAACATATGTCACGCTACTTTTCGTTCAAATTCAGGTTTACAAAGACACAAGGGTATCGTGCATAAAGAAAAATCGAAAAGTGAGGGGAATCAGTTCAATTTCCCTGCAGATAATGGAACAAAAATTAATTTTGATTACACAATTATGAAACATGAACATGCAAGAAAAACAAGCGAAGGGAGTCAGTTCAATATCACTTATGATTGCAGTATTCGCAAAAAAAGCTTTAATCGGAAAGATAACCTCAAGGCGCATGAAAAACTCCATACAGGTGAAAGGCCATATGAGTGCAATATATGTGGCGTTACTTTTGCTCTAAAAGCAAATTTAACTAAACATAAAATAATCCATACAGAAGAAAGGCCATATATTTGTAACATATGTCACGCTACTTTTCGTTCAAATTCAGGTTTACAAAGACACAAGGGTATCGTGCATAAAGAAAAATTGAAAAGCGAGGGGAATCAGTTCAATTTCCCTGCAGATAATGGAACAAAAATTAATTTTGATTACACAATTATGAAACATGAACATGCAAGAAAAACAAGCGAAGGGAGTCAGTTCAATATCACTTATGATTGCAGTATTCGCAAAAAAAGCTTTAATCGGAAAGATAACCTCAAGGCGCATGAAAAACTCCATACAGGTGAAAGGCCATATGAGTGTAATATATGTGGCGTTACTTTTGCTCTAAAAGGAAATTTAACTAAACATAAAATAATCCATACAGAAGAAAGGCCATATATTTGTAACATATGTCACGCTACTTTTCGTTCAAATTCAGGTTTACAAAGACACAAGGGTATCGTGCATAAAGAAAAATCGAAAAGTGAGGGGAATCAGTTCAATTTCCCTGCAGATAATGGAACAAAAATTAATTTTGATTACACAATTATGAAACATGACCATGCAAGAAAAACAAGCGAGGGGAGTCAGTTCAATATCACTTATGATTGCAGTATTCGCAAAAAAAGCTTTAATCGGAAAGATAACCCCAAGGCGCATGAAAAACTCCATACAGGTGAAAGGCCATATGAGTGCAATATATGTGGCGTTACTTTTGCTCTAAAAGCAAATTTAACTAAACATAAAATAATCCATACAGAAGAAAGGCCATATATTTGTAACATATGTCACGCTACTTTTCGTTCAAATTCAGGTTTACAAAGACACAAGGGTATCGTGCATAAAGAAAAATTGAAAAGCGAGGGGAATCCGTTCAATTTCCCTGCAGATAATGGAACAAAAAATAATTTTGATTACACAATTATGAAACATGACCATGCAAGAAAAACAAGCGAGGGGAGTCAGTTCAATATCACTTATGATTGCAGTATTCGCAAAAAAAGCTTTAATCGGAAAGATAACCCCAAGGCGCATGAAAAACTCCATACAGGTGAAAGGCCATATGAGTGCAATATATGTGGCGTTACTTTTGCTCTAAAAGCAAATTTAACTAAACATAAAATAATCCATACAGAAGAAAGGCCATATATTTGTAACATATGTCACGCTACTTTTCGTTCAAATTCAGGTTTACAAAGACACAAGGGTATCGTGCATAAAGAAAAATCGAAAAGCGAGGGGAATCAGTTCAATTTCCCTGCAGATAATGGAAAAAAAATTAATTTTGATTACACAATTATGAAACATGACCATGCAAGAAAAACAAGCGAGGGGAGTCAAAATAGATATTAG
- Protein Sequence
- MKHEHARKTSEGSQFNITYDCSIRKKSFNRKDNLKAHEKLHTGERPYECNICGVTFALKGNLTKHKIIHTEERPYICNICHATFRSNSGLQRHKGIVHKGKSKSEGNPFNFPADNGTKNNFDYTIMKHDHARKTSEGSQFNITYDCSIRKKSFNRKDNLKAHEKLHTGERPYECNICGVTFALKGNLTKHKIIHTEERPYICNICHATFRSNSGLQRHKGIVHKGKSKSEGNPFNFPADNGTKNNFDYTIMKHDHARKTSEGSQFNITYDCSIRKKSFNRKDNLKAHEKLHTGERPYECNICGVTFALKGNLTKHKIIHTEERPYICNICHATFRSNSGLQRHKGIVHKEKSKSEGNQFNFPADNGTKINFDYTIMKHEHARKTSEGSQFNITYDCSIRKKSFNRKDNLKAHEKLHTGERPYECNICGVTFALKGNLTKHKIIHTEERPYICNICHATFRSNSGLQRHKGIVHKGKSKSEGNPFNFPADNGTKNNFDYTIMKHDHARKTSEGSQFNITYDCSIRKKSFNRKDNLKAHEKLHTGERPYECNICGVTFALKGNLTKHKIIHTEERPYICNICHATFRSNSGLQRHKGIVHKEKSKSEGNQFNFPADNGTKINFDYTIMKHEHARKTSEGSQFNITYDCSIRKKSFNRKDNLKAHEKLHTGERPYECNICGVTFALKANLTKHKIIHTEERPYICNICHATFRSNSGLQRHKGIVHKEKLKSEGNQFNFPADNGTKINFDYTIMKHEHARKTSEGSQFNITYDCSIRKKSFNRKDNLKAHEKLHTGERPYECNICGVTFALKGNLTKHKIIHTEERPYICNICHATFRSNSGLQRHKGIVHKEKSKSEGNQFNFPADNGTKINFDYTIMKHDHARKTSEGSQFNITYDCSIRKKSFNRKDNPKAHEKLHTGERPYECNICGVTFALKANLTKHKIIHTEERPYICNICHATFRSNSGLQRHKGIVHKEKLKSEGNPFNFPADNGTKNNFDYTIMKHDHARKTSEGSQFNITYDCSIRKKSFNRKDNPKAHEKLHTGERPYECNICGVTFALKANLTKHKIIHTEERPYICNICHATFRSNSGLQRHKGIVHKEKSKSEGNQFNFPADNGKKINFDYTIMKHDHARKTSEGSQNRY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00014403;
- 90% Identity
- iTF_00014403;
- 80% Identity
- iTF_00014403;