Arep014161.1
Basic Information
- Insect
- Acrobasis repandana
- Gene Symbol
- -
- Assembly
- GCA_963576875.1
- Location
- OY756226.1:1401614-1413798[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 2.3e-10 6.5e-08 33.1 0.0 4 39 177 213 174 217 0.90 2 4 1.5e-10 4.4e-08 33.6 0.3 2 39 229 266 228 269 0.92 3 4 3.5e-14 1e-11 45.3 0.1 2 45 284 328 283 328 0.96 4 4 1.1e-17 3.3e-15 56.4 0.0 1 44 335 379 335 380 0.96
Sequence Information
- Coding Sequence
- ATGCCTGGCAACGAAGCGCACATAAAACGCGAACCGCTCTCGGACGAAGACGACAGCAACTCTTTCGCCCACGGTTACTTGCTCAATCAGCTACCCTCACTGGGGCTTCATGTGAAATCTGAACACAAGTGCTGCCATGAAGGCGGCGTACCTTCGTTGCAGCATTTGCAGCTGCAACATTTACAGTCCCAAGGGCTCGAGGAGTTGGCACCGCTGGCGCCGGCGGGCCCCGCCGCTACGCCCGTCTGCGTGAAACAGGAGCCGGCTGACGCCGCGCCTGCCACCACGCTGGAGACACTGGAGCCTGCTCCTCATGCCACGGGTGCGACTCTCCTCGACAGACACATGTCGCTGCTGTGCTCGACCGAAGTGCCTGAGTCATCGGATTTTATGTCCCTGACTGCTGTCAAAGACGAGCCGTTGTCTGAAGGAGAACAACAGCAGTATAGCGGTGACGACACGAGCGATTCCTGTGGGACGCAGCCTGAGCCGGCACCGCGGACCAGCCCCAAGAGCTGGACGCAACGCGACATGGACAACGCGCTCGAGGCTCTTCGGAAACACAACATGAGTCTCACCAAGGCATCAGCGACGTACGGCATTCCATCGACCACGCTGTGGCAGCGCGCGCACCGCCTCGGCATCGACACTCCCAAGAAGGAGGGCGCCGCCAAGTCCTGGAGCGAGGCGGACCTCAGAGGGGCCTTGCACGCGCTGCGGGCGGGGGCTATATCTGCGAACAAGGCGAGCAAGGCTTATGGAATCCCCAGCAGCACTCTGTACAAGATCGCCCGCCGCGAGGGCATCCGCCTGGCCGCGCCGTTCAACGCGGCGCCCACGGCGTGGCGGCGCGCCGACCTGGAGCGCGCGCTCGCCTCCATCCGCTGCGGGGCCAGCTCCGTGCAGCGCGCCGCCTCGCAGTACGGGATACCCACAGGCACGCTGTACGGCCGATGCAAGCGCGAAGGCATCGAGTTATCGCGCTCCAACCCCACGCCCTGGTCCGAGGACGCCATGGGTGAAGCGCTGGAAGCTGTCAGGGTGGGTCAGATGTCGATAAACCAAGCAGCCATCCACTTCAACCTGCCATATTCCTCGCTCTATGGACGCTTTAAGAGGTGCAAGTACCAAGCACAGCATTTCCCACCGATGCAGCAGCAGGACATGCAGAAGCCGCTGCAGCCGGAGCTGGCCTGCCAACCGCACGACGCGTACTACCAGCCGCACGAGCAGTACCAACACAACCACGACCACCAACTGGAGAACATGCAGATGTTCGACTACCAAGGGTACTACCACAGCGGCCTCGTCAGCTGA
- Protein Sequence
- MPGNEAHIKREPLSDEDDSNSFAHGYLLNQLPSLGLHVKSEHKCCHEGGVPSLQHLQLQHLQSQGLEELAPLAPAGPAATPVCVKQEPADAAPATTLETLEPAPHATGATLLDRHMSLLCSTEVPESSDFMSLTAVKDEPLSEGEQQQYSGDDTSDSCGTQPEPAPRTSPKSWTQRDMDNALEALRKHNMSLTKASATYGIPSTTLWQRAHRLGIDTPKKEGAAKSWSEADLRGALHALRAGAISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTAWRRADLERALASIRCGASSVQRAASQYGIPTGTLYGRCKREGIELSRSNPTPWSEDAMGEALEAVRVGQMSINQAAIHFNLPYSSLYGRFKRCKYQAQHFPPMQQQDMQKPLQPELACQPHDAYYQPHEQYQHNHDHQLENMQMFDYQGYYHSGLVS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00720139;
- 90% Identity
- iTF_00011863;
- 80% Identity
- -