Agri025506.1
Basic Information
- Insect
- Achroia grisella
- Gene Symbol
- lrrfip2
- Assembly
- GCA_030625045.1
- Location
- JAULSB010000516.1:1000654-1016550[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 0.37 5.3e+03 -2.9 0.5 50 73 61 83 31 110 0.55 2 3 4e-77 5.7e-73 246.5 19.4 1 270 131 404 131 423 0.87 3 3 2 2.9e+04 -7.1 17.9 1 48 424 470 424 489 0.74
Sequence Information
- Coding Sequence
- ATGGGCAATCTATCTAAACTAGCGACGTCTGATAACAGTGATGACGAGAGCGGGGATGCTTTCACTGATGGAGATTTTGATGACATCGATGAAGAAACAATCAAGGAACGGACAGAACTCCATAATCATTCACACATACCAGACAGTGAAGCTATAAACATTGAGTCTAAGAAGATGGAAGGGGAAACTAATGGTAACTCGGATACTAGTAACTCAAAAGAACAATCTGCTGGTAGGATCCAGTCGAAAATGAATGGACATAACAAATGTGATAGTGGACAATCTAGTGACGTAGATGTTAATGGAGATTATGTGGCTGATTTGAGACAAAATTCCCATGATGAGCAAAGTCCCTCTATTGTTGGAATATTGGGCACTCAACAAAatcatGCCGAGCAGCGGTtggcggcgcggcgggcggcacGTGCGGAGGCTCGAGAGATACGCATGCGCGAGCTTGAAAGGCAACAGCGAGAACAAGAGGACCATGCAGACAAAGCATATGACATGTATGCAGAGACGGTGGGCCGACGCGGCGGTACCAGGCTTGCGGCACTCAGTCCTTCTATACACTCACCACGACGGAGTTCAGAAGACTCGGCCGATGACGCGTTCAGCATCAAAGATCTTAGGCACGAGTTGAAAGAAGTGGAGGAGAAGTTCCGTAAGGCGATGATATTGAATGCCCAGTTGGACAACGACAAGGCGGCGCTCGGGTACCAGCTCGAGCTGCTCAAGGACAGGATAGAGGAACTGCACGAAGAATATGCGCAGTTACAGCGGGAGCACAAAGAGAAGTGTTCAGCCCACGAGCGTTTAAAGCGTGAGCACCTGTCGCTGGAGCGCGAGGTGGCAGCGGCGCGTGACGCTGTTAGGGCAAGAGACGCGGCCGCTGCAGCCGCTGGGTTCGCGTTCGTGGACGCCGCTACCCTCCCCGAGACACCCACCACGCCCACCACACCCGCCACGCCCGTCACAACCGCCACACCGAGCTTCGGCTCGGTGCCGCCGCTCGCGCTCGTCTCCCACCAGTCCGAGCAGCTGCTCAATGACGCGGGAGAAGGCACCCTCGATGTGCGGTTGCAAAAGCTGCTTGCGGGCAAGCAATCTCTGGAGTCGGAAGTGCGGAAGTTGAAATTGCAACTGAATGAAGAACGCGCCGCCAGGCAAAACGGCGTGGCCAACCACCATGATCAGGAGTACGAGAATGAGcTGGAGGCGGTGCGACGAAGCGCAGCGGAGGCGAAGGCGCGAGCGGCGAGGGCGGAGGCCGAGGCGGCGCTgcaggccgccgccgccgccaggcTCGAGGCGCAGCTGCAGCGGCTGCGGGCCCGCCAGGACCACCAGGACGAGCACGAGGAGCAGCTCAAGCAGGAGCGGCGCCGCCTGCAGCGGGAGGCGCGAGAGGCTCTCAACCGTGTCGAAGAGTTGGAAACAGAGAACAGCCATTTGACGAAACGGCTCGACAAACTCAAGAATGCGAAGTCAGCACTACTCAAGGACCTGTGA
- Protein Sequence
- MGNLSKLATSDNSDDESGDAFTDGDFDDIDEETIKERTELHNHSHIPDSEAINIESKKMEGETNGNSDTSNSKEQSAGRIQSKMNGHNKCDSGQSSDVDVNGDYVADLRQNSHDEQSPSIVGILGTQQNHAEQRLAARRAARAEAREIRMRELERQQREQEDHADKAYDMYAETVGRRGGTRLAALSPSIHSPRRSSEDSADDAFSIKDLRHELKEVEEKFRKAMILNAQLDNDKAALGYQLELLKDRIEELHEEYAQLQREHKEKCSAHERLKREHLSLEREVAAARDAVRARDAAAAAAGFAFVDAATLPETPTTPTTPATPVTTATPSFGSVPPLALVSHQSEQLLNDAGEGTLDVRLQKLLAGKQSLESEVRKLKLQLNEERAARQNGVANHHDQEYENELEAVRRSAAEAKARAARAEAEAALQAAAAARLEAQLQRLRARQDHQDEHEEQLKQERRRLQREAREALNRVEELETENSHLTKRLDKLKNAKSALLKDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00736636;
- 90% Identity
- -
- 80% Identity
- -