Agri018969.1
Basic Information
- Insect
- Achroia grisella
- Gene Symbol
- -
- Assembly
- GCA_030625045.1
- Location
- JAULSB010000368.1:4315436-4317218[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 4.9e-12 5.2e-09 36.3 0.0 2 39 11 48 10 53 0.94
Sequence Information
- Coding Sequence
- ATGATGAAGAGAAAATACAATACTTGGAAGCAGGAGGATATGGACGAAGCTTTAGAGAAACATCGAAATGGAGAAATAGGGTTCAATGAAGCTTGTAGAAGATTTAAAATACCAAAACCTACACTACGACGACATTTGAAAGGAttgaacaaaaaaacaaaatttggaCGACCTAATGATATACCACCAGACATGGAAAAGATATTAGCACAACATTTGATAAATTTAGAGTCTTGTTTTTTCGGATTAACTACCACTGAATTCAGGAAACTTGCCTTCGATCTTGCTGAAAAATGTCAACTACCTCATCGCTTTAACAGGGAGAAAAAAATAGCAGGAAAAAAATGGTATTACAGGTTTATGAAAGAGCATCCTGGTTTATCCTTACGTGTTCCTGAACCAACATCGATGGCCAGAAGTAAAGGGTTTAATAAAGAGCGGGTTAATGAGTTTTTTGATAAGTATGAAGAAATTCTAGATAAATACAAGTTTGCTGCACATCAAATATATAACATGGATGAAACTGCGTTATCCACCGTTCACAAACCTTCCAAAGTTATTGCTCAAAAAGGAAAACACCAAGTGGGTGCAATTACAAGTGGAGAAAGGGGTCTGACCACAACTTGCATATGCGCGATGAATTCAGCAGGCGAATTTATACCAccaatgttaatatttaaacgTAGCAGGCTGAATGATGCTTTAAAAAAAGGAGCTCCACCAAACACAGCATTTGGTACTTCGAAGAATGGATGGATAACATCAGAACTTTTTGTTAAATGGCTTCAACATTTTATTAAGTGTACAAGATTAGAAAAAATCGACCAAAAACAAATATTGCTTTTACTAGATGGTCATAGTACACATACAAAAAATTTAGAAGCAATCCAGATGGCTCGCGATTATGGCATAGTAATGCTTTCATTTCCTGCTCACACAACACATCGTCTACAACCGTTGGACAGATCGTTTTTTAAATCATTGAAAAGCTGTTACAATGAAGCAGCATCTTCATGGCTACGTTCAAATCCTGGTAGTGTCATAAAACAAGCAAACGTTGCAGAGCTGCTTGGAAAAGCATACCCTAGGTCGGTTCGTATGGATATAGCGCTTAATGGTTTTAAAGCAACAGGGTTGTGGCCGTGTGATAGAAATGTCATTAAAGAAGAGGATTTCGTAGCCTCTGTATACATCTCTGATCCATCAAATCAAGAACTTGGTGATTCAACTGAACCAACTAGGGAATCACCCGCTAGAGCCACATCGCCATCGATTTTAACATCATCAATAGTTGCATCGCCTCCAATAAGGGCTGTATCTCCACCAATCTtttcatcaccatcatcaccaAAAATTATAACGCCGCCTTTAGCAACTAGAGAATCAACACCACCCAACATTCAACCGGAACCTTCTACAATATCACAAGATACTTCACACAATGACGATAATTTAACAGTAGATAATCAACAAATAAAGTCTCACTTGAATATTTTATCTCCTATACCTTGCATAAAAacagtcattaaaaaaatgaagaaaGGGAAGATCGAGAAGAAAACATGA
- Protein Sequence
- MMKRKYNTWKQEDMDEALEKHRNGEIGFNEACRRFKIPKPTLRRHLKGLNKKTKFGRPNDIPPDMEKILAQHLINLESCFFGLTTTEFRKLAFDLAEKCQLPHRFNREKKIAGKKWYYRFMKEHPGLSLRVPEPTSMARSKGFNKERVNEFFDKYEEILDKYKFAAHQIYNMDETALSTVHKPSKVIAQKGKHQVGAITSGERGLTTTCICAMNSAGEFIPPMLIFKRSRLNDALKKGAPPNTAFGTSKNGWITSELFVKWLQHFIKCTRLEKIDQKQILLLLDGHSTHTKNLEAIQMARDYGIVMLSFPAHTTHRLQPLDRSFFKSLKSCYNEAASSWLRSNPGSVIKQANVAELLGKAYPRSVRMDIALNGFKATGLWPCDRNVIKEEDFVASVYISDPSNQELGDSTEPTRESPARATSPSILTSSIVASPPIRAVSPPIFSSPSSPKIITPPLATRESTPPNIQPEPSTISQDTSHNDDNLTVDNQQIKSHLNILSPIPCIKTVIKKMKKGKIEKKT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00290602; iTF_01034466; iTF_01034471; iTF_01034470; iTF_00628169; iTF_00321525; iTF_00628170; iTF_00628178; iTF_00628171; iTF_00321532; iTF_00628183; iTF_00628187; iTF_01152030; iTF_00752000; iTF_01295040; iTF_01416707;
- 90% Identity
- -
- 80% Identity
- -