Cv-a013695.1
Basic Information
- Insect
- Chloroclystis v-ata
- Gene Symbol
- -
- Assembly
- GCA_963691955.1
- Location
- OY829904.1:10858049-10863081[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.8e-10 3.1e-07 30.4 0.0 2 39 11 48 10 53 0.94 2 2 6.2e-06 0.011 15.9 0.1 1 27 523 549 523 550 0.96
Sequence Information
- Coding Sequence
- atggcGAAAAGAAAGTACAACACTTGGAAGCAGGAGGATATGGACAAAGCTTTAGAGAAACATCTAAGTGGAGAAATTGGATTCAATGAGGTCTGTAGAagatttaatatacctaagcCTACACTTCGACGACATTTGAaaggattaaataaaaaaacaaaatttggaAGACCTAATGATATGTCACCAGATATGGAAGAGATATTGGCACAGCACTTAATGAATCTGGAGTCTTGTTTCTTCGGTCTTACTACCACTGAATTCAGACGACTTGCCTTTGAGCTTGCTGAAAAATTTCAACTACCTCATCGTTTTAATAAGGAAAAGAAAATAGCAGGCAAAAAGTGGTATTACAGGTTTATGAAAGATCATCCTACATTGTCCTTGCGTGTGCCAGAATCAACCTCAATGGCCAGATGTAAAGGTTTTAATAAAGAGCGTGTTGatgaattttttaataagtacgaagaaatattagataaatataactttgcTGCACACCAAATTTATAATATGGACGAAACTGCATTATCTACGGTTCACAAACCTTCTAAAGTTATTTCTCAAAAGGGAAAACACCAAGTGGGTGCGATCACAAGTGGAGAAAGAGGCCTGACCACAACAGGCATATGCGCCATGAATGCAGCAGGTGAATTTATACCACCcatgttaatatttaaacgCAGCAGACTAAACGATGTCTTAAAAAAAGGAGCTCCTCCAAACACAGCATTCGGTTGCTCAAAAAATGGATGGATCACATCAGAACTTTTTGTTGAATGGCTCCAACATTTCATTAAATGTGCAAGATTAGAAAAAAAAgatcaaaaacaaattttgctTTTACTAGATGGTCATAGCACACATACCAAAAATTTAGAAGCTATCCAGTTGGCTCGCGATTATGGCATCATAATGCTATCTTTTCCTGCTCACACGACCCATCGCCTACAACCGTTGGACAGATCTTTCTTCAAATCATTGAAAAGCTGTTATAATGAAGCCGCATCTTCGTGGCTCCGCTCTAATCCTGGCAGTGTCATAAAACAAGCCAACATTGCAGAGCTGCTTGGAAAAGCATACCCTAGGTCGGTTCGTATGGATATAGCGCTAAATGGTTTTAAAGCAACAGGGCTTTGGCCTTGTGATAGAAATGTCATTAAAGAAGAGGATTTCGTAGCTTCTTTAAACATCTCTGATCCATCAAATCAAGAAATTGGTGACCAAACTGAACCAACTATGGAATCACCCGCTCGAGCTATATCGCCAACGCCACCAATGGTTACTTCGCCAACAATACCGGTTGTATCTCCACCAAAAGATACATCACCGTCACCACCAAAAATTACAACGCCACCTTTATCACCTAGAGTTTCAACACCACCCATCATTCAACCTGGACCTTCTACTTCACAAGACACTTCACACAACGACCATCAACTAATTAAGTCtcaattgaatattttatctcCTGTGCCTTGCATAAAAACAGTAATTAGTGTAATGAAGAAAGATGCTACAGAAATGCCACGTAATTACAAAAGGATTACTGATCGACAAAGTTGGGATCCAGATGATATGAGAGCAGCCGTCCAAGCCGTATACGACGGAACTATGGGATACCTGAAAGCTTCTAAAGCATATGAGGCAGGATCAGAGAAAGGCCCTGTTCCAAACTCATTGTTAGTATTTAGCACCAAATCGAAAATGGCCGACTACCACCATGACATGAATTCCACAAACTTCAAATGGCTTCAAGATAAGCTTATGCCCAATTTGAATGAACCAAGTGTAATTGTAATGGACAATGCATTATACATCACACAGCGTACACATCATACATCATGA
- Protein Sequence
- MAKRKYNTWKQEDMDKALEKHLSGEIGFNEVCRRFNIPKPTLRRHLKGLNKKTKFGRPNDMSPDMEEILAQHLMNLESCFFGLTTTEFRRLAFELAEKFQLPHRFNKEKKIAGKKWYYRFMKDHPTLSLRVPESTSMARCKGFNKERVDEFFNKYEEILDKYNFAAHQIYNMDETALSTVHKPSKVISQKGKHQVGAITSGERGLTTTGICAMNAAGEFIPPMLIFKRSRLNDVLKKGAPPNTAFGCSKNGWITSELFVEWLQHFIKCARLEKKDQKQILLLLDGHSTHTKNLEAIQLARDYGIIMLSFPAHTTHRLQPLDRSFFKSLKSCYNEAASSWLRSNPGSVIKQANIAELLGKAYPRSVRMDIALNGFKATGLWPCDRNVIKEEDFVASLNISDPSNQEIGDQTEPTMESPARAISPTPPMVTSPTIPVVSPPKDTSPSPPKITTPPLSPRVSTPPIIQPGPSTSQDTSHNDHQLIKSQLNILSPVPCIKTVISVMKKDATEMPRNYKRITDRQSWDPDDMRAAVQAVYDGTMGYLKASKAYEAGSEKGPVPNSLLVFSTKSKMADYHHDMNSTNFKWLQDKLMPNLNEPSVIVMDNALYITQRTHHTS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00007946;
- 90% Identity
- iTF_00321532;
- 80% Identity
- -