Agri011670.1
Basic Information
- Insect
- Achroia grisella
- Gene Symbol
- -
- Assembly
- GCA_030625045.1
- Location
- JAULSB010000212.1:3282166-3291964[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 2.9e-11 3.1e-08 33.8 0.0 4 39 126 162 123 166 0.90 2 4 2e-11 2.1e-08 34.4 0.3 2 39 178 215 177 218 0.92 3 4 1.6e-15 1.7e-12 47.5 0.1 2 45 233 277 232 277 0.96 4 4 0.031 32 5.0 0.1 1 13 284 296 284 296 0.92
Sequence Information
- Coding Sequence
- ATGTCGCTAAAGAATAGTAACTCTACGCAGACCGGGCTGGAGGAGCTGGTGCCGCTGGCGCCGGCGGGCCCGGCCGCCACGCCCGTCTGCGTCAAGCAGGAACCTACGGAAGCTCCACCAGCTCTCACACTTGAAACCCTCGAGTCTGCCCCGCACGCAGCCACCACGGGTTCAACATTGCTGGACCGACACATGACGATGCTCAGTTCAAATGAAGTGCCTGATTCTTCAGACTTCACGCCGCTTATGTCGGTCAAAGACGAGCCGCTGTCGGAGGGAGAACAACCACATTTAAGCGGCGAGGATACTAGCGATTCTTGCAGTACACAACCGGAGCCTTCGACGCGAAGCAGCCCCAAGAGCTGGACTCAACGAGACATGGACAATGCGCTCGAAGCGCTTAGAAAGCACAACATGAGTCTCACCAAgGCCTCAGCGACGTACGGTATACCATCAACCACACTGTGGCAGCGAGCGCACCGCCTCGGCATTGACACGCCGAAGAAAGAAGGCGCTTCCAAATCTTGGAGCGAAGCCGACCTAAGAGGGGCGCTGCATGCTCTAAGAGCTGGTGCTATATCTGCGAACAAGGCTAGCAAGGCTTATGGTATTCCGAGCAGCACGCTGTACAAGATTGCGCGGCGCGAGGGCATCCGGCTGGCGGCGCCCTTCAACGCCGCGCCCACCGCCTGGAGACGAGCAGACTTGGAGCGCGCACTCGCCGCCATCCGCTGCGGCGCCAGCTCCGTGCAGCGCGCGGCCTCGCAGTACGGCATCCCCACCGGCACATTATATGGAAGGTGTAAGAGAGAAGGCATCGAGCTGTCCCGCTCTAACCCCACACCCTGGTCCGAAGATGCTATGGGGGAAGCTCTTGAAGCTGTAAGGTGA
- Protein Sequence
- MSLKNSNSTQTGLEELVPLAPAGPAATPVCVKQEPTEAPPALTLETLESAPHAATTGSTLLDRHMTMLSSNEVPDSSDFTPLMSVKDEPLSEGEQPHLSGEDTSDSCSTQPEPSTRSSPKSWTQRDMDNALEALRKHNMSLTKASATYGIPSTTLWQRAHRLGIDTPKKEGASKSWSEADLRGALHALRAGAISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTAWRRADLERALAAIRCGASSVQRAASQYGIPTGTLYGRCKREGIELSRSNPTPWSEDAMGEALEAVR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01564501; iTF_01251663;
- 90% Identity
- -
- 80% Identity
- -