Basic Information

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 4 3.1e-11 3e-08 34.1 0.0 4 39 150 186 147 190 0.89

2 4 2.8e-11 2.7e-08 34.2 0.3 2 39 202 239 201 242 0.92

3 4 1.9e-16 1.8e-13 50.8 0.1 2 45 257 301 256 301 0.96

4 4 0.042 41 4.8 0.1 1 13 308 320 308 320 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	4	3.1e-11	3e-08	34.1	0.0	4	39	150	186	147	190	0.89
2	4	2.8e-11	2.7e-08	34.2	0.3	2	39	202	239	201	242	0.92
3	4	1.9e-16	1.8e-13	50.8	0.1	2	45	257	301	256	301	0.96
4	4	0.042	41	4.8	0.1	1	13	308	320	308	320	0.92

Coding Sequence: ATGCTCGGCCACGGACTATCTCGAGTGAAATGCGAACCTCAGTCGGATGATGAAGACAGCAACTCCCAATTTATTCACGGATATTTAACTAATCAGGGATCAGGTCTGGAGGAGCTGGCACCGCTGGCGCCGGCGGGCCCGGCCGCCACGCCGGTGTGTGTGAAGCAGGAACCGGCGGACACTCCCGCCTTGACTCTCGAGACCTTGCAGTCTGCTCCTCATAATGCTGCGGGCTCCATTTTAATCGATAGACACATGTCAATGTCGGCGTTTGAGCTGAAAAACGAAGTGCCTGACTCCTCGGAGTTTATGCCATTATTGGCAGTCAAGGATGAACCTGTATCGGAAGGAGAGCAACATCATCTAAGTGGTGACGATACAAGCGACTCAAGTGGTGCACAGCATGAGCCTACCACACGTGGTAGTCCCAAGAGCTGGACGCAGCAGGACATGGATAACGCGCTTGAAGCACTGAGGAAACATAATATGAGTCTTACTAAGGCATCAGCTACATATGGTATTCCCTCGACGACACTCTGGCAGCGCGCGCACCGATTAGGAATCGATACACCCAAAAAGGAAGGCGCTTCGAAATCTTGGAGTGAAGCGGATTTGCGTGGAGCCCTGCACGCTCTAAGGGCCGGCGCTATATCTGCTAATAAGGCGAGCAAAGCTTATGGCATCCCGAGCAGCACACTTTACAAGATAGCTCGTCGCGAAGGCATCCGGCTGGCGGCTCCATTCAACGCGGCTCCCACCGCGTGGCGCCGCGCCGACCTGCAGCGCGCGCTCGCCTCCATCCGCTGCGGAGCCACCTCCGTGCAGCGAGCCGCCTCACAGTATGGGATACCCACGGGCACACTGTATGGGCGATGTAAGCGAGAAGGCATAGAGCTATCTCGTTCCAACCCTACACCGTGGTCGGAGGATGCCATGGGGGAAGCACTTGAAGCAGTTAGGTAG
Protein Sequence: MLGHGLSRVKCEPQSDDEDSNSQFIHGYLTNQGSGLEELAPLAPAGPAATPVCVKQEPADTPALTLETLQSAPHNAAGSILIDRHMSMSAFELKNEVPDSSEFMPLLAVKDEPVSEGEQHHLSGDDTSDSSGAQHEPTTRGSPKSWTQQDMDNALEALRKHNMSLTKASATYGIPSTTLWQRAHRLGIDTPKKEGASKSWSEADLRGALHALRAGAISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTAWRRADLQRALASIRCGATSVQRAASQYGIPTGTLYGRCKREGIELSRSNPTPWSEDAMGEALEAVR

Sequence clustering based on sequence similarity using MMseqs2