Basic Information

Insect: Abscondita terminalis
Gene Symbol: -
Assembly: GCA_013368085.1
Location: JABVZW010002632.1:19378-22314[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 8.1e-05 0.0041 17.7 0.7 2 23 149 170 148 170 0.97

2 15 0.0025 0.13 13.0 0.5 1 23 193 216 193 216 0.95

3 15 0.00025 0.013 16.1 0.1 2 23 235 256 234 256 0.96

4 15 0.77 39 5.1 10.0 1 23 262 284 262 284 0.82

5 15 1e-06 5.2e-05 23.6 2.1 1 23 292 314 292 314 0.98

6 15 2.7e-07 1.4e-05 25.5 2.1 1 23 319 341 319 341 0.98

7 15 0.001 0.052 14.2 3.9 1 23 347 369 347 369 0.97

8 15 5.2e-06 0.00026 21.4 0.3 1 23 375 397 375 397 0.97

9 15 0.00098 0.05 14.3 4.1 1 23 403 425 403 425 0.97

10 15 4.2e-07 2.1e-05 24.9 1.8 3 23 433 453 431 453 0.96

11 15 4.3e-09 2.2e-07 31.1 0.2 1 23 458 480 458 480 0.99

12 15 7.9e-06 0.00041 20.8 1.3 1 23 486 508 486 508 0.97

13 15 8.3e-05 0.0042 17.6 0.1 1 23 514 536 514 536 0.98

14 15 7.5e-09 3.8e-07 30.4 0.5 1 23 542 564 542 564 0.99

15 15 0.00034 0.017 15.7 0.3 1 21 570 590 570 591 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	8.1e-05	0.0041	17.7	0.7	2	23	149	170	148	170	0.97
2	15	0.0025	0.13	13.0	0.5	1	23	193	216	193	216	0.95
3	15	0.00025	0.013	16.1	0.1	2	23	235	256	234	256	0.96
4	15	0.77	39	5.1	10.0	1	23	262	284	262	284	0.82
5	15	1e-06	5.2e-05	23.6	2.1	1	23	292	314	292	314	0.98
6	15	2.7e-07	1.4e-05	25.5	2.1	1	23	319	341	319	341	0.98
7	15	0.001	0.052	14.2	3.9	1	23	347	369	347	369	0.97
8	15	5.2e-06	0.00026	21.4	0.3	1	23	375	397	375	397	0.97
9	15	0.00098	0.05	14.3	4.1	1	23	403	425	403	425	0.97
10	15	4.2e-07	2.1e-05	24.9	1.8	3	23	433	453	431	453	0.96
11	15	4.3e-09	2.2e-07	31.1	0.2	1	23	458	480	458	480	0.99
12	15	7.9e-06	0.00041	20.8	1.3	1	23	486	508	486	508	0.97
13	15	8.3e-05	0.0042	17.6	0.1	1	23	514	536	514	536	0.98
14	15	7.5e-09	3.8e-07	30.4	0.5	1	23	542	564	542	564	0.99
15	15	0.00034	0.017	15.7	0.3	1	21	570	590	570	591	0.94

Sequence Information

Coding Sequence: atgaacgaGTTTGATGCATATTCGAACAttgatttgaataaattgtGTAGAGTTTGTATGAACTCGTTGGAAAGCAGTTACTTatcgttatttatttcaaacacaACGACCAGTTCAATGTTATTAGCTTCAAAAATGATGTCATTTACAACTCTACAGATTACATACGGAGACGGTCTTCCCCACTCGGTTTGTCTCAATTGTTctcaacaaattgaaaatgcttATTTATTGAAGCTACAATGTGAAGAATCAGACATGACGCTTAGGAGGTATTTAAATCCTCAACCTGATATACCAAAAGCAGATGTGGAAACAAATACAgtagaaaatgattttgacaCGTCTTTTCCAGAACGTAATTCTGATACTGATGTTTTTGAAGAAACGTTTGCTAAAGTTGatgttaacaattataaaaatgaaaatctattTAGTTTGCTTGAATGCGGAGAGTGTAagagtacatttaaaaaagctTCCCAATTGAGAATTCACTTAAAGTCACATAAAACGAAGGAACAGACAAAACTACCTGAAAACAATTGTAGTATAATAACTAACAAAGAACCTGCTCATATTTGTACTGTATGTGATGTCAAATACCAgaataatgataaattaatcGAGCACATGCTGAACGAACATACTGAAAAAGTTTTGCACGAAGATGAATTTGAACAAACATCCGAAGAGAGATTAGTATGTAATGTTTGcaataaatcatatttaaaagcTAGTAATCTAGCAGCTCATATGGGTACACATACCGGCATTAAACCATTTGAATGTCACATATGCGGTAAATGCTTTACACAAGGAAGAGCTCACGCTTGCCACATGCGTACTCATTTAGATGCCATAGAAAAACCTCATAGGTGTGATGTATGTAAAAAGGAGTTCGTGCAAGAAAGTCAGTTACAAGCGCATATGAAGAAACATTCAGGAAAATCTTTTGTTTGCAATGTTTGTGggaaaaattattgcaattcgGGAAATTTAAAGTCTCACATGCGTTTACATACTGGGGATAAACCATATGCATGCCATATATGTGGGAAAAAGTTTGCTCAAAGTAATGCTCATTCGTATCATATGAAAACACACTCAGgGGAAAAGCCATTTGCGTGTGATGTCTGTTCTAAAGCTTTTACAACAAACGGTCAACTAGTAAATCATCGTAGATTACACACTGGAGAACGACCATTTGCCTGTAATGTTTGTCATAAACGATTTACACAAAAAGTGGCTCACACAATTCATATGATGACCCATACAGGCAACAAACCTCACTTATGCAGTatttgtggaaaaaaatattctcaaaataGTCAGTTAATAGAACATATGCGTTCACACACAGGAGAGACGTTCCAGTGCAATATCTGCGGAAAAAGTTATTCGACTGCAGGAAATTTAGCAGCCCATATGAAAACTCACACAGGCATTAAGTCACACATATGTAATATTTGCAATAAAGGATTTTATGTTGCCAACAAACTTGCCAAACATATGAGGACACATACAGGCGAGAGACCATACGCTTGTTCTAATTGTCCTAAAAGGTTCACTAGTGCAGATGTAATGAAAGTTCATGTTCGTATTCACACAGGCGAACGACCATACCGTTGTGGAGTGTGTGGGAAAGGTTTTACAAACAATTCACAATTAACTGTACACATGAGATCTCACACAGGCCAAAAACCATATACCTGTAATATATGTTTTCAAGGGTTTACCACCTCTGCTAGTTTAACTATACATTCTAATACCTGTTCTAATGGTATACGAAGAGTTTCAGATGCATCCACATATTCGGTAAACTTAAATTACAAGTAA
Protein Sequence: MNEFDAYSNIDLNKLCRVCMNSLESSYLSLFISNTTTSSMLLASKMMSFTTLQITYGDGLPHSVCLNCSQQIENAYLLKLQCEESDMTLRRYLNPQPDIPKADVETNTVENDFDTSFPERNSDTDVFEETFAKVDVNNYKNENLFSLLECGECKSTFKKASQLRIHLKSHKTKEQTKLPENNCSIITNKEPAHICTVCDVKYQNNDKLIEHMLNEHTEKVLHEDEFEQTSEERLVCNVCNKSYLKASNLAAHMGTHTGIKPFECHICGKCFTQGRAHACHMRTHLDAIEKPHRCDVCKKEFVQESQLQAHMKKHSGKSFVCNVCGKNYCNSGNLKSHMRLHTGDKPYACHICGKKFAQSNAHSYHMKTHSGEKPFACDVCSKAFTTNGQLVNHRRLHTGERPFACNVCHKRFTQKVAHTIHMMTHTGNKPHLCSICGKKYSQNSQLIEHMRSHTGETFQCNICGKSYSTAGNLAAHMKTHTGIKSHICNICNKGFYVANKLAKHMRTHTGERPYACSNCPKRFTSADVMKVHVRIHTGERPYRCGVCGKGFTNNSQLTVHMRSHTGQKPYTCNICFQGFTTSASLTIHSNTCSNGIRRVSDASTYSVNLNYK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00854273; iTF_00003177; iTF_00153725;
90% Identity: iTF_00003177;
80% Identity: -