Basic Information

Insect: Aquatica leii
Gene Symbol: -
Assembly: GCA_035610365.1
Location: CM069433.1:102318334-102325538[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 3.8e-05 0.0092 19.0 1.1 1 23 104 126 104 126 0.98

2 15 0.0025 0.61 13.3 0.5 1 23 149 172 149 172 0.95

3 15 0.00029 0.07 16.2 0.1 2 23 191 212 190 212 0.96

4 15 1.1 2.5e+02 5.0 10.2 1 23 218 240 218 240 0.82

5 15 1.7e-05 0.004 20.1 4.0 1 23 248 270 248 270 0.97

6 15 8e-08 1.9e-05 27.4 2.1 1 23 275 297 275 297 0.98

7 15 0.0012 0.28 14.3 3.9 1 23 303 325 303 325 0.97

8 15 1.9e-06 0.00045 23.1 0.4 1 23 331 353 331 353 0.98

9 15 0.0011 0.27 14.4 4.1 1 23 359 381 359 381 0.97

10 15 4.8e-07 0.00012 25.0 1.8 3 23 389 409 387 409 0.96

11 15 1.5e-07 3.7e-05 26.5 0.1 2 23 415 436 414 436 0.97

12 15 1.6e-05 0.0039 20.2 1.3 1 23 442 464 442 464 0.97

13 15 7.7e-05 0.019 18.1 0.1 1 23 470 492 470 492 0.98

14 15 2e-08 4.8e-06 29.3 0.7 1 23 498 520 498 520 0.99

15 15 0.001 0.24 14.6 0.3 1 20 526 545 526 547 0.93

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	3.8e-05	0.0092	19.0	1.1	1	23	104	126	104	126	0.98
2	15	0.0025	0.61	13.3	0.5	1	23	149	172	149	172	0.95
3	15	0.00029	0.07	16.2	0.1	2	23	191	212	190	212	0.96
4	15	1.1	2.5e+02	5.0	10.2	1	23	218	240	218	240	0.82
5	15	1.7e-05	0.004	20.1	4.0	1	23	248	270	248	270	0.97
6	15	8e-08	1.9e-05	27.4	2.1	1	23	275	297	275	297	0.98
7	15	0.0012	0.28	14.3	3.9	1	23	303	325	303	325	0.97
8	15	1.9e-06	0.00045	23.1	0.4	1	23	331	353	331	353	0.98
9	15	0.0011	0.27	14.4	4.1	1	23	359	381	359	381	0.97
10	15	4.8e-07	0.00012	25.0	1.8	3	23	389	409	387	409	0.96
11	15	1.5e-07	3.7e-05	26.5	0.1	2	23	415	436	414	436	0.97
12	15	1.6e-05	0.0039	20.2	1.3	1	23	442	464	442	464	0.97
13	15	7.7e-05	0.019	18.1	0.1	1	23	470	492	470	492	0.98
14	15	2e-08	4.8e-06	29.3	0.7	1	23	498	520	498	520	0.99
15	15	0.001	0.24	14.6	0.3	1	20	526	545	526	547	0.93

Sequence Information

Coding Sequence: ATGATGTCATTTACAACTCTACAGATTGTATATGGGGACGGACTCCCGCATTTGGTTTGTCTTAATTGTTcacaacaaattgaaaacgcTTATTTGTTGAAACTCCAGTGTGAGGAATCGGATATGACTCTTAGACGATATTTAAATTCTGAACCTACAATAACAACCACAAATGTAGATACACATACAATAAAAGAGGATTTTGATGCATCATATGTAGAACATAATTCGGACAATGATGCTTTTGAACACACTTGTGCTAACATATCTGATTCAGATACTTATAAAAACGAAGCTGTGCTTAAACTGTTTGAGTGTAGTGAGTGTAAAAGTACGTTTAACAAAGCTTCCCAATtaaacattcatttaaaatcacataaaaaGAAAGATCTTATAAAACTTAGCGAGAGTAATTGTAAgattttaaatgataaagaaGCTGCTCATATTTGCACCGTTTGTGATGTTAGATATCAAAACAATGATAAGTTAATTGAACATATGCTTAATGAACACACAGAAAAAGTGTTGCATGAAGATGAATTTGACCAAACGTCCGAAGAAAGATTGGTTTGTAATGTTTGTAATAAATCGTATTTAAAAGCAAGTAATTTAGCAGCTCACATGGGTACACACACTGGGATTAAACCGTTTGAATGTCATATATGCGGGAAGTGCTTTACTCAAGGTCGGGCTCATGCTTGTCATATGCGCACACATTTAGATGCTGTAGATAAACCACATCATTGCGATGTCTGCAAAAAAGAATTTGTGCAAGAAAGTCAATTACAAGTTCACATGAAAAAGCATTCAGGAAAATCTTTTGTTTGTAATGTGTGTGGAAAAAGTTATTGTAATTCTGGAAATTTAAAGTCTCATATGCGATTGCACACAGGGGATAAACCATATGCTTGTCATATATGTGGAAAAAAGTTTGCTCAAAGTAATGCACATTCATATCATATGAAAACACATTCAGgagAAAAACCGTTTGTATGTGATGTCTGTCAGAAAGCTTTCACGACAAACGGACAACTAGTCAATCATCGTAGATTACATACGGGCGAACGGCCATTTGCTTGCAATGTATGCCACAAACGATTTACACAAAAAGTTGCTCACACAATCCACATGATGACTCACACGGGTAATAAACCTCATCTTTGTAGCATATGTGGAAAAAAGTATTCGCAAAATAGTCAATTGATAGAACATATGCGTTCACATACTGGAGAAACATTACAATGCAGTATATGCGGCAAAGGGTACTCGACTGCGGGAAATTTAGCAGCTCATATGAAAACTCATACAGGAATTAAATCTCATATTTGTAATGTATGTAATAAAGGATTTTATGTTGCTAATAAACTTGCCAAGCATATGAGAACACACACAGGCGAGAGGCCGTACGCTTGTTCTGTTTGTCCTAAAAGATTCACAAGCGCAGATGTAATGAAAGTGCACGTACGAATTCATACAGGTGAGCGACCATATAGATGCGAAATATGTGAGAAGGGATTTACGAATAATTCGCAATTAACGGTTCATATGAGATCTCATACAGGCCATAGGCCGTACACGTGTAATATGTGCTTTCAAGGCTTTACCACATCGGCGAGTTTAACTGTACATTCGAGTACATGTACTAGTGGTATACGTCGAGTTTCAGACACAGCAGTATATTCTGTGAACttaaattataagtaa
Protein Sequence: MMSFTTLQIVYGDGLPHLVCLNCSQQIENAYLLKLQCEESDMTLRRYLNSEPTITTTNVDTHTIKEDFDASYVEHNSDNDAFEHTCANISDSDTYKNEAVLKLFECSECKSTFNKASQLNIHLKSHKKKDLIKLSESNCKILNDKEAAHICTVCDVRYQNNDKLIEHMLNEHTEKVLHEDEFDQTSEERLVCNVCNKSYLKASNLAAHMGTHTGIKPFECHICGKCFTQGRAHACHMRTHLDAVDKPHHCDVCKKEFVQESQLQVHMKKHSGKSFVCNVCGKSYCNSGNLKSHMRLHTGDKPYACHICGKKFAQSNAHSYHMKTHSGEKPFVCDVCQKAFTTNGQLVNHRRLHTGERPFACNVCHKRFTQKVAHTIHMMTHTGNKPHLCSICGKKYSQNSQLIEHMRSHTGETLQCSICGKGYSTAGNLAAHMKTHTGIKSHICNVCNKGFYVANKLAKHMRTHTGERPYACSVCPKRFTSADVMKVHVRIHTGERPYRCEICEKGFTNNSQLTVHMRSHTGHRPYTCNMCFQGFTTSASLTVHSSTCTSGIRRVSDTAVYSVNLNYK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00003931;
90% Identity: -
80% Identity: -