Basic Information

Insect: Abscondita cerata
Gene Symbol: -
Assembly: GCA_030710515.1
Location: JALBCR010000883.1:373669-375587[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 8.7e-06 0.003 20.2 0.9 1 23 106 128 106 128 0.98

2 15 0.0015 0.53 13.1 0.5 1 23 151 174 151 174 0.95

3 15 0.00016 0.054 16.3 0.1 2 23 193 214 192 214 0.96

4 15 0.59 2e+02 5.0 10.2 1 23 220 242 220 242 0.82

5 15 6.3e-07 0.00022 23.8 2.1 1 23 250 272 250 272 0.98

6 15 1.6e-07 5.6e-05 25.7 2.1 1 23 277 299 277 299 0.98

7 15 1.3 4.4e+02 4.0 0.6 1 8 305 312 305 313 0.91

8 15 1.8e-06 0.00061 22.4 0.3 1 23 317 339 317 339 0.97

9 15 0.00061 0.21 14.4 4.1 1 23 345 367 345 367 0.97

10 15 2.6e-07 8.8e-05 25.0 1.8 3 23 375 395 373 395 0.96

11 15 2.7e-09 9.2e-07 31.3 0.2 1 23 400 422 400 422 0.99

12 15 1.3e-05 0.0044 19.7 1.3 1 23 428 450 428 450 0.97

13 15 1.6e-05 0.0054 19.4 0.2 1 23 456 478 456 478 0.98

14 15 4.6e-09 1.6e-06 30.5 0.5 1 23 484 506 484 506 0.99

15 15 0.001 0.35 13.7 0.3 1 21 512 532 512 533 0.93

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	8.7e-06	0.003	20.2	0.9	1	23	106	128	106	128	0.98
2	15	0.0015	0.53	13.1	0.5	1	23	151	174	151	174	0.95
3	15	0.00016	0.054	16.3	0.1	2	23	193	214	192	214	0.96
4	15	0.59	2e+02	5.0	10.2	1	23	220	242	220	242	0.82
5	15	6.3e-07	0.00022	23.8	2.1	1	23	250	272	250	272	0.98
6	15	1.6e-07	5.6e-05	25.7	2.1	1	23	277	299	277	299	0.98
7	15	1.3	4.4e+02	4.0	0.6	1	8	305	312	305	313	0.91
8	15	1.8e-06	0.00061	22.4	0.3	1	23	317	339	317	339	0.97
9	15	0.00061	0.21	14.4	4.1	1	23	345	367	345	367	0.97
10	15	2.6e-07	8.8e-05	25.0	1.8	3	23	375	395	373	395	0.96
11	15	2.7e-09	9.2e-07	31.3	0.2	1	23	400	422	400	422	0.99
12	15	1.3e-05	0.0044	19.7	1.3	1	23	428	450	428	450	0.97
13	15	1.6e-05	0.0054	19.4	0.2	1	23	456	478	456	478	0.98
14	15	4.6e-09	1.6e-06	30.5	0.5	1	23	484	506	484	506	0.99
15	15	0.001	0.35	13.7	0.3	1	21	512	532	512	533	0.93

Sequence Information

Coding Sequence: ATGTTATTAGCTTCAAAAATGATGTCATTTACAACTCTACAGATTACGTACGGGGACGGTCTTCCCCACTCGGTTTGTGTTACTTGTTCTCAACAAATTGAAAATGCATACTTATTGAAGCTACAATGTGAAGAATCTGACATGACGCTTAGGAGGTATTTAAATCCTCAACCTGCTATACAAAAAACAGATGTGGAGACACATACAGTAGAAAATGATTTTGACACGTCTTTTCCAGAACGTAATTCTGAAACTGATGTTTTTGAAGAAACTTTTGCTAAGGTTGACGACAACAGTGAAAATCTTCTTACTTTGTTTGAATGCGGAGAATGTAAGAGTACATTTAAAAAGGCTTCCCAATTGAGAATTCACATAAAATCACATAAAAAGAAAGAGCAAGCGAAAGTATCTGAAAACAATTGTAACAATATAACTAACAAAGATGCTGCTCATATTTGTACTGTATGTGatgtaaaatatcaaaataatgataaattaattGAACACATGCTTAACGAACATACTGAAAAAGTTTTACACGAAGATGAATTTGAACAAACATCTGAAGAGAGATTAGTATGTAACGTttgtaataaatcatatttaaaagcTAGTAATCTAGCAGCTCACATGGGTACACATACTGGTATTAAGCCGTTTGAATGTCATATATGTGGTAAATGCTTTACACAAGGGCGGGCTCATGCTTGCCACATGCGTACTCATTTAGATGCTGTAGAAAAACCACATAGGTGTGATGTGTGTAAAAAAGAGTTTGTTCAAGAAAGTCAGCTGCAAGCTCATATGAAGAAACATTCAGGAAAATCTTTTGTTTGCAATGTTTGCGggaaaaattattgcaattctGGAAATTTAAAGTCTCACATGCGTTTGCATACGGGTGATAAACCGTATGCGTGTCATATATGTGGAAAAGgagaAAAGCCATTTGCGTGTGACATCTGTTCTAAAGCTTTTACAACAAACGGTCAGCTAGTAAATCATCGTAGATTACACACAGGAGAACGACCGTTTGCCTGTAATGTTTGCCATAAAAGATTTACACAAAAAGTAGCTCACACGATTCACATGATGACCCATACCGGCAACAAACCTCACTTATGCAGTATTTGTGGGAAAAAATATTCTCAAAACAGTCAGTTAATAGAACACATGCGTTCACACACAGGAGAGACATTCCAATGCAATATCTGCGGAAAAAGTTATTCGACTGCTGGCAATTTAGCGGCCCACATGAAAACTCATACGGGCATCAAGTCTCACATATGTAATATTTGCAGTAAGGGATTTTATGTTGCCAACAAACTTGCCAAACATATGAGAACACATACGGGCGAGAGACCTTACGCTTGTTCTAATTGCCCTAAAAGGTTCACTAGTGCAGACGTAATGAAAGTTCACATTCGTATTCACACAGGTGAACGACCATACCGTTGTGGAGTATGTGGGAAAGGTTTTACAAACAATTCGCAATTAACCGTACATATGAGATCTCACACAGGTCAAAGACCATATACCTGCAATGTTTGTTTTCAAGGATTTACAACCTCTGCTAGTTTATCTATTCATTCTAATACTTGTTCCAATGGTATACGAAGAGTTTCGGATGTAGCCACATATTcagataatttaaattacaaataa
Protein Sequence: MLLASKMMSFTTLQITYGDGLPHSVCVTCSQQIENAYLLKLQCEESDMTLRRYLNPQPAIQKTDVETHTVENDFDTSFPERNSETDVFEETFAKVDDNSENLLTLFECGECKSTFKKASQLRIHIKSHKKKEQAKVSENNCNNITNKDAAHICTVCDVKYQNNDKLIEHMLNEHTEKVLHEDEFEQTSEERLVCNVCNKSYLKASNLAAHMGTHTGIKPFECHICGKCFTQGRAHACHMRTHLDAVEKPHRCDVCKKEFVQESQLQAHMKKHSGKSFVCNVCGKNYCNSGNLKSHMRLHTGDKPYACHICGKGEKPFACDICSKAFTTNGQLVNHRRLHTGERPFACNVCHKRFTQKVAHTIHMMTHTGNKPHLCSICGKKYSQNSQLIEHMRSHTGETFQCNICGKSYSTAGNLAAHMKTHTGIKSHICNICSKGFYVANKLAKHMRTHTGERPYACSNCPKRFTSADVMKVHIRIHTGERPYRCGVCGKGFTNNSQLTVHMRSHTGQRPYTCNVCFQGFTTSASLSIHSNTCSNGIRRVSDVATYSDNLNYK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00003931;
90% Identity: iTF_00003931;
80% Identity: -