Basic Information

Insect: Abscondita cerata
Gene Symbol: -
Assembly: GCA_030710515.1
Location: JALBCR010002478.1:196710-198727[-]

Transcription Factor Domain

TF Family: zf-GAGA
Domain: zf-GAGA domain
PFAM: PF09237
TF Group: Zinc-Coordinating Group
Description: Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.033 3.2e+03 0.7 0.0 25 37 9 21 4 26 0.86

2 11 0.26 2.5e+04 -2.2 0.0 20 37 43 60 41 67 0.78

3 11 0.91 8.7e+04 -3.9 0.0 23 30 135 142 132 147 0.79

4 11 0.055 5.3e+03 -0.0 0.1 20 45 220 245 210 251 0.80

5 11 0.0021 2e+02 4.5 0.0 21 46 277 302 268 307 0.86

6 11 0.00047 45 6.6 0.1 21 46 333 358 325 361 0.88

7 11 0.00036 34 7.0 0.3 21 46 389 414 381 416 0.84

8 11 0.0036 3.5e+02 3.8 0.0 21 45 445 469 436 475 0.86

9 11 1.9e-05 1.8 11.0 0.2 21 46 501 526 493 531 0.88

10 11 0.00031 30 7.2 0.2 21 46 557 582 549 585 0.84

11 11 0.0054 5.2e+02 3.2 0.0 21 46 613 638 603 642 0.84

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.033	3.2e+03	0.7	0.0	25	37	9	21	4	26	0.86
2	11	0.26	2.5e+04	-2.2	0.0	20	37	43	60	41	67	0.78
3	11	0.91	8.7e+04	-3.9	0.0	23	30	135	142	132	147	0.79
4	11	0.055	5.3e+03	-0.0	0.1	20	45	220	245	210	251	0.80
5	11	0.0021	2e+02	4.5	0.0	21	46	277	302	268	307	0.86
6	11	0.00047	45	6.6	0.1	21	46	333	358	325	361	0.88
7	11	0.00036	34	7.0	0.3	21	46	389	414	381	416	0.84
8	11	0.0036	3.5e+02	3.8	0.0	21	45	445	469	436	475	0.86
9	11	1.9e-05	1.8	11.0	0.2	21	46	501	526	493	531	0.88
10	11	0.00031	30	7.2	0.2	21	46	557	582	549	585	0.84
11	11	0.0054	5.2e+02	3.2	0.0	21	46	613	638	603	642	0.84

Sequence Information

Coding Sequence: ATGGCGGAACCTGCTACATTTATAGTTACATGCAAAATTTGCCTAGGGAATATTAAGCAAGAAACGAAATTTGAAGATTTAGAACCAAAGTCAGTTTTGGAATTTGCCACGGGCGACtttCTAAGCATCACTGAAAACCCAGTTGCGTGCGACAAATGTAGAGTGGATATCGAGAAAACGCATCAACTGTACATGCAAAATGAACACATTGTCATCAAAGAGGAAATTAAAGTGGAAGACAGTGTGGACACGGAAAGGATTGTTGCGAagcaaaatgtatttttaaaaaccgataTACCTTCGTTTATTGAAGAAGCTCACCAATTTAAATGTAACTGGTGCAATTACACAACCCATGATAATTCTGTGTTAAAAACTCACCAAGAAATTCATACTCATAGTGAACCTTTACGATgtaacatttgtaattattcttTCAAGGAAATGGATTTGTTAGTTGAGCATATAGCTACGCATACTGCTACAAATGAAGTGGAATATCAGCAGCAATTGCAGATTACCGAAGATTTATTCGAATGTCATGGTTGTGGTTATAGAacaaactgtaaaaatattctgaaaattcacACGAGAACATGCTTACATGGACAAAAGACTTCATTAAAAAAGCATCAAAAACGTTACAAAAGCATTCATTCTGAAGATAAgccatttaagtgtaatttttgtgattacACCTGTAAATGTGTTGGTAACTTAAAAGAACACATGAAGACACATTCTAACAAACGAAATTTTAGCTGCGACCAGTGTAACTACAAGACGTACTCTAATTGGACTTTGAATAGTCACAAAAGAGttcattctaaagaaaaaccatataaatgcaatttgtgtgattacaCCAGTAAATACGCAAGTAACTTAAAAATGCACTTGCAGATACATTCGGGTGAACCAAAATTTACCTGCGACCAGTGCGACTACAAGACGTACTCCAATTCGATGTTGACACGTCACAAAACAGTTCATTCTGAAGAAAGACCATATAAATGCACTTTATGTGATTACACTTGTAAATCATCACTTAACTTAAAAATGCACTTGAAGATACATTCGGAGGAACTAAATTTTAGTTGCGTCCAGTGCGACTACAAGACGTACTCCAATTCGATATTGACACGTCACAAAAGAGTTCATTCTGAAGAAAGACCATATAAATGCAGTTTATGTGATTACACATGTAAATTCTCAGCAAACTTAAAAATGCACTTGCAGATACATTCGGATGAACTAAATTTTAGTTGCGACCAGTGCAACTACAAGACGTACTCGAATTGGACTTTGAATAGTCACAAAAGAGttcattctaaagaaaaaccatataaatgcaatttgtgtgattacaCTAGCAAATACGCAAGTAACTTAAAAATGCACTTGCAGACACATTCGGGTGAACCAATATTTACCTGCGACCAGTGCGACTACAAGACGTACTCCAATTCGATGTTGACACGTCACAAAAAAgttcattctgaagaaaatCCATATGAATGCAGTTTATGTGATTACACTTGTAAATCCTCGGCTAACTTAAAAAGACACTTGAAGATACATTCGGGTGAACGAAATTTTATCTGCGACCAGTGTGATTACAAGACTTACTCCAATTCGATGTTGACACGCCACAAAAGAGTTCATTCTGAAGAGAGACCATATAAATGCACTTTATGTGATTACACTTGTAAATCATCACCTAACTTAAAAATGCACTTGAAGATACATTCGGGTGAACTGAATTTTAGCTGCGGCCAGTGCGACTATAAGACTTACTCCGAATGGACGttgaaacgtcataaaaaagttcattctgaagaaaaaccatATAAATGCAACTTGTGTGATTACACCGGTAAACACGCAGGTGACTTAAAAAGACACATAAAGATTCATTTGGGAGCTGGGAATAGTGCGACTACAAAATGTACTCCAATGGGAAATTGA
Protein Sequence: MAEPATFIVTCKICLGNIKQETKFEDLEPKSVLEFATGDFLSITENPVACDKCRVDIEKTHQLYMQNEHIVIKEEIKVEDSVDTERIVAKQNVFLKTDIPSFIEEAHQFKCNWCNYTTHDNSVLKTHQEIHTHSEPLRCNICNYSFKEMDLLVEHIATHTATNEVEYQQQLQITEDLFECHGCGYRTNCKNILKIHTRTCLHGQKTSLKKHQKRYKSIHSEDKPFKCNFCDYTCKCVGNLKEHMKTHSNKRNFSCDQCNYKTYSNWTLNSHKRVHSKEKPYKCNLCDYTSKYASNLKMHLQIHSGEPKFTCDQCDYKTYSNSMLTRHKTVHSEERPYKCTLCDYTCKSSLNLKMHLKIHSEELNFSCVQCDYKTYSNSILTRHKRVHSEERPYKCSLCDYTCKFSANLKMHLQIHSDELNFSCDQCNYKTYSNWTLNSHKRVHSKEKPYKCNLCDYTSKYASNLKMHLQTHSGEPIFTCDQCDYKTYSNSMLTRHKKVHSEENPYECSLCDYTCKSSANLKRHLKIHSGERNFICDQCDYKTYSNSMLTRHKRVHSEERPYKCTLCDYTCKSSPNLKMHLKIHSGELNFSCGQCDYKTYSEWTLKRHKKVHSEEKPYKCNLCDYTGKHAGDLKRHIKIHLGAGNSATTKCTPMGN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00003188;
90% Identity: iTF_00003188;
80% Identity: iTF_00003188;