Basic Information

Insect: Abscondita cerata
Gene Symbol: -
Assembly: GCA_030710515.1
Location: JALBCR010002478.1:196710-198727[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 17 0.0018 0.62 12.9 2.4 1 23 109 131 109 131 0.98

2 17 0.00014 0.048 16.4 0.1 2 23 138 159 137 159 0.97

3 17 0.018 6.1 9.8 7.0 1 23 225 247 225 247 0.99

4 17 0.0021 0.73 12.7 2.1 1 23 253 275 253 275 0.98

5 17 1.1e-05 0.0037 19.9 1.2 1 23 281 303 281 303 0.99

6 17 0.00051 0.18 14.7 2.3 1 23 309 331 309 331 0.97

7 17 0.00012 0.041 16.7 4.0 1 23 337 359 337 359 0.99

8 17 0.016 5.4 10.0 1.7 1 23 365 387 365 387 0.98

9 17 7.8e-05 0.027 17.2 3.3 1 23 393 415 393 415 0.99

10 17 0.0021 0.73 12.7 2.1 1 23 421 443 421 443 0.98

11 17 6.2e-06 0.0021 20.7 1.8 1 23 449 471 449 471 0.99

12 17 0.00018 0.061 16.1 2.6 1 23 477 499 477 499 0.98

13 17 3.1e-06 0.0011 21.6 2.7 1 23 505 527 505 527 0.98

14 17 0.0001 0.036 16.8 1.8 1 23 533 555 533 555 0.97

15 17 2.8e-05 0.0096 18.6 3.3 1 23 561 583 561 583 0.99

16 17 0.0027 0.94 12.4 1.7 1 23 589 611 589 611 0.98

17 17 9.3e-06 0.0032 20.1 1.3 1 23 617 639 617 639 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	17	0.0018	0.62	12.9	2.4	1	23	109	131	109	131	0.98
2	17	0.00014	0.048	16.4	0.1	2	23	138	159	137	159	0.97
3	17	0.018	6.1	9.8	7.0	1	23	225	247	225	247	0.99
4	17	0.0021	0.73	12.7	2.1	1	23	253	275	253	275	0.98
5	17	1.1e-05	0.0037	19.9	1.2	1	23	281	303	281	303	0.99
6	17	0.00051	0.18	14.7	2.3	1	23	309	331	309	331	0.97
7	17	0.00012	0.041	16.7	4.0	1	23	337	359	337	359	0.99
8	17	0.016	5.4	10.0	1.7	1	23	365	387	365	387	0.98
9	17	7.8e-05	0.027	17.2	3.3	1	23	393	415	393	415	0.99
10	17	0.0021	0.73	12.7	2.1	1	23	421	443	421	443	0.98
11	17	6.2e-06	0.0021	20.7	1.8	1	23	449	471	449	471	0.99
12	17	0.00018	0.061	16.1	2.6	1	23	477	499	477	499	0.98
13	17	3.1e-06	0.0011	21.6	2.7	1	23	505	527	505	527	0.98
14	17	0.0001	0.036	16.8	1.8	1	23	533	555	533	555	0.97
15	17	2.8e-05	0.0096	18.6	3.3	1	23	561	583	561	583	0.99
16	17	0.0027	0.94	12.4	1.7	1	23	589	611	589	611	0.98
17	17	9.3e-06	0.0032	20.1	1.3	1	23	617	639	617	639	0.99

Sequence Information

Coding Sequence: ATGGCGGAACCTGCTACATTTATAGTTACATGCAAAATTTGCCTAGGGAATATTAAGCAAGAAACGAAATTTGAAGATTTAGAACCAAAGTCAGTTTTGGAATTTGCCACGGGCGACtttCTAAGCATCACTGAAAACCCAGTTGCGTGCGACAAATGTAGAGTGGATATCGAGAAAACGCATCAACTGTACATGCAAAATGAACACATTGTCATCAAAGAGGAAATTAAAGTGGAAGACAGTGTGGACACGGAAAGGATTGTTGCGAagcaaaatgtatttttaaaaaccgataTACCTTCGTTTATTGAAGAAGCTCACCAATTTAAATGTAACTGGTGCAATTACACAACCCATGATAATTCTGTGTTAAAAACTCACCAAGAAATTCATACTCATAGTGAACCTTTACGATgtaacatttgtaattattcttTCAAGGAAATGGATTTGTTAGTTGAGCATATAGCTACGCATACTGCTACAAATGAAGTGGAATATCAGCAGCAATTGCAGATTACCGAAGATTTATTCGAATGTCATGGTTGTGGTTATAGAacaaactgtaaaaatattctgaaaattcacACGAGAACATGCTTACATGGACAAAAGACTTCATTAAAAAAGCATCAAAAACGTTACAAAAGCATTCATTCTGAAGATAAgccatttaagtgtaatttttgtgattacACCTGTAAATGTGTTGGTAACTTAAAAGAACACATGAAGACACATTCTAACAAACGAAATTTTAGCTGCGACCAGTGTAACTACAAGACGTACTCTAATTGGACTTTGAATAGTCACAAAAGAGttcattctaaagaaaaaccatataaatgcaatttgtgtgattacaCCAGTAAATACGCAAGTAACTTAAAAATGCACTTGCAGATACATTCGGGTGAACCAAAATTTACCTGCGACCAGTGCGACTACAAGACGTACTCCAATTCGATGTTGACACGTCACAAAACAGTTCATTCTGAAGAAAGACCATATAAATGCACTTTATGTGATTACACTTGTAAATCATCACTTAACTTAAAAATGCACTTGAAGATACATTCGGAGGAACTAAATTTTAGTTGCGTCCAGTGCGACTACAAGACGTACTCCAATTCGATATTGACACGTCACAAAAGAGTTCATTCTGAAGAAAGACCATATAAATGCAGTTTATGTGATTACACATGTAAATTCTCAGCAAACTTAAAAATGCACTTGCAGATACATTCGGATGAACTAAATTTTAGTTGCGACCAGTGCAACTACAAGACGTACTCGAATTGGACTTTGAATAGTCACAAAAGAGttcattctaaagaaaaaccatataaatgcaatttgtgtgattacaCTAGCAAATACGCAAGTAACTTAAAAATGCACTTGCAGACACATTCGGGTGAACCAATATTTACCTGCGACCAGTGCGACTACAAGACGTACTCCAATTCGATGTTGACACGTCACAAAAAAgttcattctgaagaaaatCCATATGAATGCAGTTTATGTGATTACACTTGTAAATCCTCGGCTAACTTAAAAAGACACTTGAAGATACATTCGGGTGAACGAAATTTTATCTGCGACCAGTGTGATTACAAGACTTACTCCAATTCGATGTTGACACGCCACAAAAGAGTTCATTCTGAAGAGAGACCATATAAATGCACTTTATGTGATTACACTTGTAAATCATCACCTAACTTAAAAATGCACTTGAAGATACATTCGGGTGAACTGAATTTTAGCTGCGGCCAGTGCGACTATAAGACTTACTCCGAATGGACGttgaaacgtcataaaaaagttcattctgaagaaaaaccatATAAATGCAACTTGTGTGATTACACCGGTAAACACGCAGGTGACTTAAAAAGACACATAAAGATTCATTTGGGAGCTGGGAATAGTGCGACTACAAAATGTACTCCAATGGGAAATTGA
Protein Sequence: MAEPATFIVTCKICLGNIKQETKFEDLEPKSVLEFATGDFLSITENPVACDKCRVDIEKTHQLYMQNEHIVIKEEIKVEDSVDTERIVAKQNVFLKTDIPSFIEEAHQFKCNWCNYTTHDNSVLKTHQEIHTHSEPLRCNICNYSFKEMDLLVEHIATHTATNEVEYQQQLQITEDLFECHGCGYRTNCKNILKIHTRTCLHGQKTSLKKHQKRYKSIHSEDKPFKCNFCDYTCKCVGNLKEHMKTHSNKRNFSCDQCNYKTYSNWTLNSHKRVHSKEKPYKCNLCDYTSKYASNLKMHLQIHSGEPKFTCDQCDYKTYSNSMLTRHKTVHSEERPYKCTLCDYTCKSSLNLKMHLKIHSEELNFSCVQCDYKTYSNSILTRHKRVHSEERPYKCSLCDYTCKFSANLKMHLQIHSDELNFSCDQCNYKTYSNWTLNSHKRVHSKEKPYKCNLCDYTSKYASNLKMHLQTHSGEPIFTCDQCDYKTYSNSMLTRHKKVHSEENPYECSLCDYTCKSSANLKRHLKIHSGERNFICDQCDYKTYSNSMLTRHKRVHSEERPYKCTLCDYTCKSSPNLKMHLKIHSGELNFSCGQCDYKTYSEWTLKRHKKVHSEEKPYKCNLCDYTGKHAGDLKRHIKIHLGAGNSATTKCTPMGN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00003440;
90% Identity: iTF_00003440;
80% Identity: iTF_00003440;