Acer081779.1
Basic Information
- Insect
- Abscondita cerata
- Gene Symbol
- lrrfip2
- Assembly
- GCA_030710515.1
- Location
- JALBCR010003279.1:146400-148427[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 0.06 5.7e+03 -1.3 1.5 24 90 31 92 25 97 0.62 2 3 8.4e-108 8.1e-103 346.2 31.6 1 300 98 391 98 391 0.93 3 3 0.018 1.8e+03 0.3 5.1 120 170 389 439 388 449 0.60
Sequence Information
- Coding Sequence
- ATGAGTGACACACGAACAAAAAATTCCACACCATCAGCTGGTAGCGTTGATTCGCTAgccgatattttaaataatttaaattcggACGATGAGAGACAAAACACCGAAGACGAATGCGAAGATGACATAATATCATCGGAAAttgaatcaaataaatttaaattatcggGTGTAACTGAAGATAGCACTAATGATAGCGACGCTACTGACGTCCGTTTAAGTAGAAAAAACAGCGTATCCCTTGAAGAAGGGAATATAATCCATCAatttcttaattcttgtaacgataatGCGGAAGCGCGTCTGTTAGCGAGGCGACAAGCTCGGGCTGAAGCTAGAGATATTCGTATGCGTGAACTAGAACGTCAACaaaaagaacaagaagaaaatgCCGATCGACAGTATGACATGATAGAACAATCGCATCGAACGACTAGAACTACTAGTAATCGATTCTTGTCTAGTCGACGGAGTTCGGAAGATTCTTTAGAGGATGGAGGAAGCATCAGGGAAATTCGAcACGAACTTAAAGAAATGGAAGAGAAGTTTCGAAAGGCCATGATAGCAAATGCTCAATTAGACAACGATAAAGCATCACAGACATATCAATTGGAACTTCTGAAGGATAGGCTGGAGGAGTTGGAAGAGGAATTTTCTCAACTTCGTCGCGAGCATAGAGATAAGTGTCGAGAGCACGATCAACTTAAGAGATTGTCGGCACGTTTAAAAGATGATTTAACTGTTACCCGTTTAGAATTAGATGAGAGAGATCGATTAATTGCCGAAAAAGGTTTAGTGATAGTAGTTGAGGATACTTCTTTTTATGAAGAGTGCGAAAAAGGTGATGGTACTGTTAATGGCATTTGTAGTACTCCAAAGAAATCGTTGGTGTCTGCTGAAAATGCGCAGTTGTTAGAGGATGCTGGAGAAGGTAGTTTAGacgTTCGGTTAGCCAAATttgctttagaaaaaaaagatctaCAAGATCAAATAAGTCATTTAAGATTAgaattagaagaagaaaaaagtaggaaaagaaaaactagTGGAATCACTTTGAACGGTCCTACCTCCGACTCTGATTGTGATCCAGATGATGTTCAgaGAGATGTAGGAAGACAATTAGCCGATTACAAATTTAGAGCTCAAAAGGCTGAGCAAGATGTGGCTACGTTGCAAGCTACTGTAGCCAGATTAGAAAAAGCGCTTAAGCAAGAAAAGAGGAAATTGCAAAGAGAGGCGAGAGAAGCACAAAATCGAGCAGAAGAATTGGAAACCGCAAATACCCATTTATTAAAACGTTTAGATAAGCTTAAAAATGCCAAATCAACGCTACTTAAAGAACTCTGA
- Protein Sequence
- MSDTRTKNSTPSAGSVDSLADILNNLNSDDERQNTEDECEDDIISSEIESNKFKLSGVTEDSTNDSDATDVRLSRKNSVSLEEGNIIHQFLNSCNDNAEARLLARRQARAEARDIRMRELERQQKEQEENADRQYDMIEQSHRTTRTTSNRFLSSRRSSEDSLEDGGSIREIRHELKEMEEKFRKAMIANAQLDNDKASQTYQLELLKDRLEELEEEFSQLRREHRDKCREHDQLKRLSARLKDDLTVTRLELDERDRLIAEKGLVIVVEDTSFYEECEKGDGTVNGICSTPKKSLVSAENAQLLEDAGEGSLDVRLAKFALEKKDLQDQISHLRLELEEEKSRKRKTSGITLNGPTSDSDCDPDDVQRDVGRQLADYKFRAQKAEQDVATLQATVARLEKALKQEKRKLQREAREAQNRAEELETANTHLLKRLDKLKNAKSTLLKEL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00151782;
- 90% Identity
- -
- 80% Identity
- -