Zqui000908.1
Basic Information
- Insect
- Zygothrica quintamaculata
- Gene Symbol
- lrrfip2
- Assembly
- GCA_037044455.1
- Location
- JBAMBS010000246.1:15511-30871[-]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 3.1e-111 6.8e-107 357.5 28.0 1 299 45 335 45 336 0.98 2 2 0.094 2.1e+03 -2.0 0.2 208 233 353 377 337 392 0.56
Sequence Information
- Coding Sequence
- ATGGGCAACCCCATAACACCCGATAACCTCGTACCTGCAATGCTCGAGTCACCCGAGAAATGGGAGGCAGCGTGCTTATTTGCGGCCACAGTAATGTTTCAGCTAAGGCTGGCTGAAAACCAAAAGAGAGCGGCTGAAGCTCGCCTAGCTGCTCGTCGTCAAGCCCGTGCTGAGGCCCGTGATATACGTATGCGTGAACTTGAGCGTCAACAAAaggaacaagaacaacacgCTGATCGTGCTTTTGATATACTTAATTCGAGTGGGTGTGTTAACGATATGTTTTCGGCACATTCCAACCGTCTTGTCTACAGTAGTCTTTTTAACTTAACTCGTGGTACAGTTTCGCGACGCAGTAGCGAAGATTCGTTGGAGGATGAAAGTCGAACTTTACGTGACGTCAGGCACGATCTTAAAGAAACCGAAGAACGATTTCGTAAAGCGATGATAACAAATGCTCAGCTTGACAACGATCGGTCATCTCAAATCTATGAAGTTAAATTACTTAAGGACAAAATTGAGACAATGCAGGAATCTTTTGCACACTTACAGCGTGAGCTTAAAAACAAGGTTCGCGATTGCAATATACTAAAACGAAGCTTAGATCGTACATCTCTTGAGTTAAACCTTGTACAAGGCCAACTAAGTGAGCGAGACTTGCTGATCGCTGAACATGGACTTGTTATTGTCGCTATTGAGAATAATGATGGCAGTGACGCGAAACGCGCCTTGGTTAGTACTGAAAATGCTAATATGTTAGCAACCATACAAGGCTCGCTGGaTGTAAGACTTAAGAAGATTTCTGAAGAAAAAAAGCAGTTGGTCGTTGAAGTACAAAAGTTGCATGAACGGTTAGACTTGTGCAACAATGAAGACAAGGTGGGCCACGAAAATTTGATCATGGACTCTTTGGGCTATGACGATGAATTTGACAGTCAAAGAGAAGCTAATAAAATCATATCGGATTATAAATACAAACTTCAGAAAGCGGAACAGGAAATCGCTAATCTGCAGGCAAGCTTAGCACGTTCAGAGACGCAAGTGGTTCGTTATAAGAGCACGGCAGAAGCAGCTGAAAAAGCAGAAGgagaattaaaatttgaacGTCGTAAACTGCAAAGAGAGAAAACTGGATATCGCATGGCACTCCGTAAAGGTGAGGGAATACTTCCCAAATCCCATGAGATgcaaaaattgccaacaacTTGGTCACATAGTTAA
- Protein Sequence
- MGNPITPDNLVPAMLESPEKWEAACLFAATVMFQLRLAENQKRAAEARLAARRQARAEARDIRMRELERQQKEQEQHADRAFDILNSSGCVNDMFSAHSNRLVYSSLFNLTRGTVSRRSSEDSLEDESRTLRDVRHDLKETEERFRKAMITNAQLDNDRSSQIYEVKLLKDKIETMQESFAHLQRELKNKVRDCNILKRSLDRTSLELNLVQGQLSERDLLIAEHGLVIVAIENNDGSDAKRALVSTENANMLATIQGSLDVRLKKISEEKKQLVVEVQKLHERLDLCNNEDKVGHENLIMDSLGYDDEFDSQREANKIISDYKYKLQKAEQEIANLQASLARSETQVVRYKSTAEAAEKAEGELKFERRKLQREKTGYRMALRKGEGILPKSHEMQKLPTTWSHS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -