Zfil020979.1
Basic Information
- Insect
- Zygaena filipendulae
- Gene Symbol
- -
- Assembly
- GCA_907165275.1
- Location
- OU015670.1:5954-8583[+]
Transcription Factor Domain
- TF Family
- HMGA
- Domain
- HMGA domain
- PFAM
- AnimalTFDB
- TF Group
- Unclassified Structure
- Description
- This entry represents the HMGA family, whose members contain DNA-binding domains, also known as AT hooks due to their ability to interact with the narrow minor groove of AT-rich DNA sequences. They play an important role in chromatin organisation [1]. The high mobility group (HMG) proteins are the most abundant and ubiquitous nonhistone chromosomal proteins. They bind to DNA and to nucleosomes and are involved in the regulation of DNA-dependent processes such as transcription, replication, recombination, and DNA repair. They can be grouped into three families: HMGB (HMG 1/2), HMGN (HMG 14/17) and HMGA (HMG I/Y). The characteristic domains are: AT-hook for the HMGA family, the HMG Box for the HMGB family, and the nucleosome-binding domain (NBD) for the members of the HMGN family [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 7 0.00028 0.62 10.3 4.0 5 13 146 154 144 155 0.89 2 7 0.00028 0.62 10.3 4.0 5 13 196 204 194 205 0.89 3 7 0.00028 0.62 10.3 4.0 5 13 246 254 244 255 0.89 4 7 0.00028 0.62 10.3 4.0 5 13 415 423 413 424 0.89 5 7 0.00028 0.62 10.3 4.0 5 13 465 473 463 474 0.89 6 7 0.00028 0.62 10.3 4.0 5 13 515 523 513 524 0.89 7 7 0.00028 0.62 10.3 4.0 5 13 565 573 563 574 0.89
Sequence Information
- Coding Sequence
- ATGACCGGCGCCCAAGGCCCCCTGCGACGGGTCGGGCCAGTGGCCCCGCCGCCCACCACGACGGCCGCAGGGGGTGAGGAGGGCCGACCAGCTCCGCGCCAGCACTCCCCTCCCCCCGAAGCCCCTCCACGCCGCCACTCACCGGGGCGGCCCCGTCGAGGCCGCAGAGGAAAACACCCCCACGGCCTCCAACCCCCGGCCGCGGCGCTCGAGCTACGCCGCAGCCCGCCTCAGTGGCGCCGCCGCCCCGGAGGACGACAGCGCCACCTACATGGGCCGCCTCGACCACGTGCTTGCTGCCTGCAAGTGGGTGAGACGGCCCCCTCCCGGTGCCTCATGCCGGGCGCGGCGTCGGATGAAATCGACGGCGCCGCACCCGAACATTCCGGCCCTTCTCCCGGCCACGGTTTTTACGCCGCGACCCGCCTCAGCCGCGCCCCCACGCCAAAGCGCCCGAGAGGCACGGCCTACCCGTCCCGGTGCCGCATGCCGGGCGCGGCGTCGGATGAAATCGACGGCGCCGCACCCGAACATTCCGGCCCCTCTCCCGGCCACGGTTTTTACGCCGCGACCCGCCTCAGCCGCGCCCCCACGCCAAAGCGCCCGAGAGGCACGGCCTACCCGTCCCGGTGCCGCATGCCGGGCGCGGCGTCGGATGAAATCGACGGCGCCGCACCCGAACATTCCGGCCCTTCTCCCGGCCACGGTTTTCACGCCGCGACCCGCCTCAGCCGCGCCCCCACGCCAAAGCGCCCGAGAGGCACGGCCTACCCGTCACGGTGCCTCATGTCGGGCGCAGCGCTGAATGACGACGATGCGCCGGAACACGCGGCGCACCGCCGCCCTCCTCCCTCTCTCGGGGACCTTGTGCAAAGGACGCCGGTCGGGCCCATGACCGGCGCCCAAGGCCCCCTGCGACGGGTCAGCCCCTCCACGCCGCCAATCACCGGGGCGGCCCCGTCGAGGCCGCAGAGGAAAAGCATCTCCACGGCCTCTAACACTCAGCCGCGGTGCTCCCCGAGCCACCGCGGCCCGCCTCAGTGGCGCCGCCGCCCCGGAGGACGACAGCGCCACCTACATGGGCCGCCTCGACCACGTGCTTGCTGCCTGCAAGTGGGTGAGACGGCCCCCTCCCGGTGCCTCATGCCGGGCGCGGCGTCGGATGAAATCGACGGCGCCGCACCCGAACATTCCGGCCCTTCTCCCGGCCACGGTTTTTACGCCGCGACCCGCCTCAGCCGCGCCCCCACGCCAAAGCGCCCGAGAGGCACGGCCTACCCGTCCCGGTGCCGCATGCCGGGCGCGGCGTCGGATGAAATCGACGGCGCCGCACCCGAGCATTCCGGCCCTTCTCCCGGCCACGGTTTTTACGCCGCGACCCGCCTCAGCCGCGCCCCCACGCCAAAGCGCCCGAGAGGCACGGCCTACCCGTCCCGGTGCCGCATGCCGGGCGCGGCGTCGGATGAAATCGACGGCGCCGCACCCGAACATTCCGGCCCTTCTCCCGGCCACGGTTTTTACGCCGCGACCCGCCTCAGCCGCGCCCCCACGCCAAAGCGCCCGAGAGGCACGGCCTACCCGTCCCGGTGCCGCATGCCGGGCGCGGCGTCGGATGAAATCGACGGCGCCGCACCCGAACATTCCGGCCCTTCTCCCGGCCACGGTTTTTACGCCGCGACCCGCCTCAGCCGCGCCCCCACGCCAAAGCGCCCGAGAGGCACGGCCTACGCTCCCCTCTCCCGGCCACGGTTTTTTACGCCGCGGCCCACCTCAGTTGCACCCCCACGCCAAAGCGCCCGAGAGGCGCAACCTACCCGCTGGCCCTTCTCAGCGCCGCACTCACCGGCATTCCGGCCCGCCTCAGGGTTCCTCTTGGCTTCACCGTGGGTGGACAGTACCCACGGCTACTAA
- Protein Sequence
- MTGAQGPLRRVGPVAPPPTTTAAGGEEGRPAPRQHSPPPEAPPRRHSPGRPRRGRRGKHPHGLQPPAAALELRRSPPQWRRRPGGRQRHLHGPPRPRACCLQVGETAPSRCLMPGAASDEIDGAAPEHSGPSPGHGFYAATRLSRAPTPKRPRGTAYPSRCRMPGAASDEIDGAAPEHSGPSPGHGFYAATRLSRAPTPKRPRGTAYPSRCRMPGAASDEIDGAAPEHSGPSPGHGFHAATRLSRAPTPKRPRGTAYPSRCLMSGAALNDDDAPEHAAHRRPPPSLGDLVQRTPVGPMTGAQGPLRRVSPSTPPITGAAPSRPQRKSISTASNTQPRCSPSHRGPPQWRRRPGGRQRHLHGPPRPRACCLQVGETAPSRCLMPGAASDEIDGAAPEHSGPSPGHGFYAATRLSRAPTPKRPRGTAYPSRCRMPGAASDEIDGAAPEHSGPSPGHGFYAATRLSRAPTPKRPRGTAYPSRCRMPGAASDEIDGAAPEHSGPSPGHGFYAATRLSRAPTPKRPRGTAYPSRCRMPGAASDEIDGAAPEHSGPSPGHGFYAATRLSRAPTPKRPRGTAYAPLSRPRFFTPRPTSVAPPRQSAREAQPTRWPFSAPHSPAFRPASGFLLASPWVDSTHGY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01569354;
- 90% Identity
- -
- 80% Identity
- -