Zfil018072.1
Basic Information
- Insect
- Zygaena filipendulae
- Gene Symbol
- -
- Assembly
- GCA_907165275.1
- Location
- OU015655.1:1-8853[+]
Transcription Factor Domain
- TF Family
- HMGA
- Domain
- HMGA domain
- PFAM
- AnimalTFDB
- TF Group
- Unclassified Structure
- Description
- This entry represents the HMGA family, whose members contain DNA-binding domains, also known as AT hooks due to their ability to interact with the narrow minor groove of AT-rich DNA sequences. They play an important role in chromatin organisation [1]. The high mobility group (HMG) proteins are the most abundant and ubiquitous nonhistone chromosomal proteins. They bind to DNA and to nucleosomes and are involved in the regulation of DNA-dependent processes such as transcription, replication, recombination, and DNA repair. They can be grouped into three families: HMGB (HMG 1/2), HMGN (HMG 14/17) and HMGA (HMG I/Y). The characteristic domains are: AT-hook for the HMGA family, the HMG Box for the HMGB family, and the nucleosome-binding domain (NBD) for the members of the HMGN family [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 7 0.00029 0.65 10.3 4.0 5 13 147 155 145 156 0.89 2 7 0.00029 0.65 10.3 4.0 5 13 197 205 195 206 0.89 3 7 0.00029 0.65 10.3 4.0 5 13 247 255 245 256 0.89 4 7 0.00013 0.29 11.4 2.8 5 13 304 312 302 313 0.89 5 7 0.00029 0.65 10.3 4.0 5 13 522 530 520 531 0.89 6 7 0.00029 0.65 10.3 4.0 5 13 572 580 570 581 0.89 7 7 0.00029 0.65 10.3 4.0 5 13 622 630 620 631 0.89
Sequence Information
- Coding Sequence
- AATGACGACGATGCGCCGGAACACGCGGCGCACCGCCGCCCTCCTCCCTCTCTCGGGGACCTTGTGCAAAGGACGCCGGTCGGGCCCATGACCGGCGCCCAAGGCCCCCTGCGACGGGTCAGCCCCTCCACGCCGCCAATCACCGGGGCGGCCCCGTCGAGGCCGCAGAGGAAAAGCATCTCCACGGCCTCTAACACTCAGCCGCGGTGCTCCCCGAGCCACCGCGGCCCGCCTCAGTGGCGCCGCCGCCCCGGAGGACGACAGCGCCACCTACATGGGCCGCCTCGACCACGTGCTTGCTGCCTGCAAGTGGGTGAGACGGCCCCCTCCCGGTGCCTCATGCCGGGCGCGGCGTCGGATGAAATCGACGGCGCCGCACCCGAACATTCCGGCCCTTCTCCCGGCCACGGTTTTTACGCCGCGACCCGCCTCAGCCGCGCCCCCACGCCAAAGCGCCCGAGAGGCACGGCCTACCCGTCCCGGTGCCGCATGCCGGGCGCGGCGTCGGATGAAATCGACGGCGCCGCACCCGAGCATTCCGGCCCTTCTCCCGGCCACGGTTTTTACGCCGCGACCCGCCTCAGCCGCGCCCCCACGCCAAAGCGCCCGAGAGGCACGGCCTACCCGTCCCGGTGCCGCATGCCGGGCGCGGCGTCGGATGAAATCGACGGCGCCGCACCCGAACATTCCGGCCCTTCTCCCGGCCACGGTTTTTACGCCGCGACCCGCCTCAGCCGCGCCCCCACGCCAAAGCGCCCGAGAGGCACGGCCTACGCTCCCCTCTCCCGGCCACGGTTTTTTACGCCGCGGCCCACCTCAGTTGCACCCCCACGCCAAAGCGCCCGAGAGGCGCAACCTACCGTCCCCTCTCCCGGCCACGGTTTTTACGCCGCGACCCGCCTCAGTCGCGCCCCCACGCCAAAGCGCCCGAGAGGCGCAACCTACCCGTCTCGGTGCCTCATGTCGGGCGCAGCGCTGGCCCTTCTCAGCGCCGCACTCACCGGCATTCCGGCCCGCCTCAGGGTTCCTCTTGGCTTCACCAATGACGACGATGCGCCGGAACACGCGACGCACCGCCGCCCTCCTCCCTCTCTCGGGGACCTTGTGCAGAGGACGCCGGTCGGGCCCATGACCGGCGCCCAAGGCCCCCTGCGACGGGTCGGGCCAGTGGCCCCGCCGCCCACCACGACGGCCGCAGGGGGTGAGGAGGGCCGACTAGCTCCGCGCCAGCACTCCCCTCCCCCCGAAGCCCCTCCACGCCGCCACTCACCGGGGCGGCCCCGTCGAGGTCGCAGAGGAAAACACCCCCACGGCCTCCAACCCCCGGCCGCGGCGCTCGAGCTACGCCGCAGCCCGCCTCAGTGGCGCCGCCGCCCCGGAGGACGACAGCGCCACCTACATGGGCCGCCTCGACCACGTGCTTGCTGCCTGCAAGTGGGTGAGACGGCCCCCTCCCGGTGCCTCATGCCGGGCGCGGCGTCGGATGAAATCGACGGCGCCGCACCCGAACATTCCGGCCCTTCTCCCGGCCACGGTTTTTACGCCGCGACCCGCCTCAGCCGCGCCCCCACGCCAAAGCGCCCGAGAGGCACGGCCTACCCGTCCCGGTGCCGTATGCCGGGCGCGGCGTCGGATGAAATCGACGGCGCCGCACCCGAACATTCCGGCCCTTCTCCCGGCCACGGTTTTCACGCCGCGACCCGCCTCAGCCGCGCCCCCACGCCAAAGCGCCCGAGAGGCACGGCCTACCCGTCCCGGTGCCGCATGCCGGGCGCGGCGTCGGATGAAATCGACGGCGCCGCACCCGGACATTCCGGCCCTTCTCCCGGCCACGGTTTTTACGCCGCGACCCGCCTCAGCCGCGCCCCCACGCCAAAGCGCCCGAGAGGCACGGCCTACCCGTCACGGTGCCTCATGTCGGGCGCAGCGCTGGTCATTCCTAGTCAGCGCCGCACTCGCCGGCATTCTGGCCCGCCTCTGGGTTCCTCTTAG
- Protein Sequence
- NDDDAPEHAAHRRPPPSLGDLVQRTPVGPMTGAQGPLRRVSPSTPPITGAAPSRPQRKSISTASNTQPRCSPSHRGPPQWRRRPGGRQRHLHGPPRPRACCLQVGETAPSRCLMPGAASDEIDGAAPEHSGPSPGHGFYAATRLSRAPTPKRPRGTAYPSRCRMPGAASDEIDGAAPEHSGPSPGHGFYAATRLSRAPTPKRPRGTAYPSRCRMPGAASDEIDGAAPEHSGPSPGHGFYAATRLSRAPTPKRPRGTAYAPLSRPRFFTPRPTSVAPPRQSAREAQPTVPSPGHGFYAATRLSRAPTPKRPRGATYPSRCLMSGAALALLSAALTGIPARLRVPLGFTNDDDAPEHATHRRPPPSLGDLVQRTPVGPMTGAQGPLRRVGPVAPPPTTTAAGGEEGRLAPRQHSPPPEAPPRRHSPGRPRRGRRGKHPHGLQPPAAALELRRSPPQWRRRPGGRQRHLHGPPRPRACCLQVGETAPSRCLMPGAASDEIDGAAPEHSGPSPGHGFYAATRLSRAPTPKRPRGTAYPSRCRMPGAASDEIDGAAPEHSGPSPGHGFHAATRLSRAPTPKRPRGTAYPSRCRMPGAASDEIDGAAPGHSGPSPGHGFYAATRLSRAPTPKRPRGTAYPSRCLMSGAALVIPSQRRTRRHSGPPLGSS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01569354;
- 90% Identity
- -
- 80% Identity
- -