Zfil015156.1
Basic Information
- Insect
- Zygaena filipendulae
- Gene Symbol
- -
- Assembly
- GCA_907165275.1
- Location
- OU015678.1:37858-43760[+]
Transcription Factor Domain
- TF Family
- HMGA
- Domain
- HMGA domain
- PFAM
- AnimalTFDB
- TF Group
- Unclassified Structure
- Description
- This entry represents the HMGA family, whose members contain DNA-binding domains, also known as AT hooks due to their ability to interact with the narrow minor groove of AT-rich DNA sequences. They play an important role in chromatin organisation [1]. The high mobility group (HMG) proteins are the most abundant and ubiquitous nonhistone chromosomal proteins. They bind to DNA and to nucleosomes and are involved in the regulation of DNA-dependent processes such as transcription, replication, recombination, and DNA repair. They can be grouped into three families: HMGB (HMG 1/2), HMGN (HMG 14/17) and HMGA (HMG I/Y). The characteristic domains are: AT-hook for the HMGA family, the HMG Box for the HMGB family, and the nucleosome-binding domain (NBD) for the members of the HMGN family [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.00062 1.4 9.2 4.0 5 13 150 158 148 159 0.89 2 14 0.00062 1.4 9.2 4.0 5 13 200 208 198 209 0.89 3 14 0.00062 1.4 9.2 4.0 5 13 250 258 248 259 0.89 4 14 0.00062 1.4 9.2 4.0 5 13 300 308 298 309 0.89 5 14 0.00027 0.61 10.4 2.8 5 13 357 365 355 366 0.89 6 14 0.00062 1.4 9.2 4.0 5 13 575 583 573 584 0.89 7 14 0.00062 1.4 9.2 4.0 5 13 625 633 623 634 0.89 8 14 0.00062 1.4 9.2 4.0 5 13 675 683 673 684 0.89 9 14 0.00027 0.61 10.4 2.8 5 13 725 733 723 734 0.89 10 14 0.00062 1.4 9.2 4.0 5 13 900 908 898 909 0.89 11 14 0.00062 1.4 9.2 4.0 5 13 950 958 948 959 0.89 12 14 0.00062 1.4 9.2 4.0 5 13 1000 1008 998 1009 0.89 13 14 0.00027 0.61 10.4 2.8 5 13 1057 1065 1055 1066 0.89 14 14 5 1.1e+04 -3.3 3.2 2 11 1134 1143 1133 1144 0.94
Sequence Information
- Coding Sequence
- ATGAGTGCCCCTCAGAATGACGACGATGCGCCGGAACACGCGACGCACCGCCGCCCTCCTCCCTCTCTCGGGGACCTTGTGCAAAGGACGCCGGTCGGGCCCATGACCGGCGCCCAAAGGCCCCCTGCGACGGGTCAGGTAGATGGCCCCGCCGCCCACCACGACGGCCGCAGGGGGAGGAAAAGCATCTCCACGGCCTCTAACACTCAGCCGCGGTGCTCCCCGAGCCACCGCGGCCCGCCTCAGTGGCGCCGCCGCCCCGGAGGACGACAGCGCCACCTACATTGGCCGCCTCGACCACGTGCTTGCTGCCTGCAAGTGGGTGAGACGGCCCCCTCCCGGTGCCTCATGCCGGGCGCGGCGTCGGATGAAATCGACGGCGCCGCACCCGAACATTCCGGCCCTTCTCCCGGCCACGGTTTTTACGCCGCGACCCGCCTCAGCCGCGCCCCCACGCCAAAGCGCCCGAGAGGCACGGCCTACCCGTCCCGGTGCCGCATGCCGGGCGCGGCGTCGGATGAAATCGACGGCGCCGCACCCGAGCATTCCGGCCCTTCTCCCGGCCACGGTTTTTACGCCGCGACCCGCCTCAGCCGCGCCCCCACGCCAAAACGCCCGAGAGGCACGGCCTACCCGTCCCGGTGCCGCATGCCGGGCGCGGCGTCGGATGAAATCGACGGCGCCGCACCCGAACATTCCGGCCCTTCTCCCGGCCACGGTTTTTACGCCGCGACCCGCCTCAGCCGCGCCCCCACGCCAAAGCGCCCGAGAGGCACGGCCTACCCGTCCCGGTGCCGCATGCCGGGCGCGGCGTCGGATGAAATCGACGGCGCCGCACCCGAACATTCCGGCCCTTCTCCCGGCCACGGTTTTTACGCCGCGACCCGCCTCAGCCGCGCCCCCACGCCAAAGCGCCCGAGAGGCACGGCCTACGCTCCCCTCTCCCGGCCACGGTTTTTTACGCCGCGGCCCACCTCAGTTGCACCCCCACGCCAAAGCGCCCGAGAGGCGCAACCTACCGTCCCCTCTCCCGGCCACGGTTTTTACGCCGCGACCCGCCTCAGTCGCGCCCCCACGCCAAAGCGCCCGAGAGGCGCAACCTACCCGTCTCGGTGCCTCATGTCGGGCGCAGCGCTGGCCCTTCTCAGCGCCGCACTCACCGGCATTCCGGCCCGCCTCAGGGTTCCTCTTGGCTTCACCAATGACGACGATGCGCCGGAACACGCGACGCACCGCCGCCCTCCTCCCTCTCTCGGGGACCTTGTGCAGAGGACGCCGGTCGGGCCCATGACCGGCGCCCAAGGCCCCCTGCGACGGGTCGGGCCAGTGGCCCCGCCGCCCACCACGACGGCCGCAGGGGGTGAGGAGGGCCGACTAGCTCCGCGCCAGCACTCCCCTCCCCCCGAAGCCCCTCCACGCCGCCACTCACCGGGGCGGCCCCGTCGAGGCCGCAGAGGAAAACACCCCCACGGCCTCCAACCCCCGGCCGCGGCGCTCGAGCTACGCCGCAGCCCGCCTCAGTGGCGCCGCCGTCCCGGAGGACGACAGCGCCACCTACATGGGCCGCCTCGACCACGTGCTTGCTGCCTGCAAGTGGGTGAGACGGCCCCCTCCCGGTGCCTCATGCCGGGCGCGGCGTCGGATGAAATCGACGGCGCCGCACCCGAACATTCCGGCCCTTCTCCCGGCCACGGTTTTTACGCCGCGACCCGCCTCAGCCGCGCCCCCACGCCAAAGCGCCCGAGAGGCACGGCCTACCCGTCCCGGTGCCGCATGCCGGGCGCGGCGTCGGATGAAATCGACGGCGCCGCACCCGAGCATTCCGGCCCTTCTCCCGGCCACGGTTTTTACGCCGCGACCCGCCTCAGCCGCGCCCCCACGCCAAAGCGCCCGAGAGGCACGGCCTACCCGTCCCGGTGCCGCATGCCGGGCGCGGCGTCGGATGAAATCGACGGCGCCGCACCCGAACATTCCGGCCCTTCTCCCGGCCACGGTTTTTACGCCGCGACCCGCCTCAGCCGCGCCCCCACGCCAAAGCGCCCGAGAGGCACGGCCTACCCGTCGCGGTGCCGCATGCCGGGCGCGGCGTCGGATGAAATCGACGGCGCCGCACCCGAACATTCCGGCCCTTCTCCCGGCCACGGTTTTTACGCCGCGACCCGCCTCAGTCGCGCCCCCACGCCAAAGCGCCCGAGAGGCGCAACCTACCCGTCTCGGTGCCTCATGCCGGGCGCAGCGCTGGCCCTTCTCAGCGCCGCACTCACCGGCATTCCGGCCCGCCTCAGGGTTCCTCTTGGCTTCACCAATGACGACGATGCGCCGGAACACGCGGCGCACCGCCGCCCTCCTCCCTCTCTCGGGGACCTTGTGCAAAGGACGCCGGTCGGGCCCATGACCGGCGCCCAAGGCCCCCTGCGACGGGTCAGAGGAAAAGCATCTCCACGGCCTCTAACACTCAGCCGCGGTGCTCCCCGAGCCACCGCGGCCCGCCTCAGTGGCGCCGCCGCCCCGGAGGACGACAGCGCCACCTACATGGGCCGCCTCGACCACGTGCTTGCTGCCTGCAAGTGGGTGAGACGGCCCCCTCCCGGTGCCTCATGCCGGGCGCGGCGTCGGATGAAATCGACGGCGCCGCACCCGAAACATTCCGGCCCTTCTCCCGGCCACGGTTTTTACGCCGCGACCCGCCTCAGCCGCGCCCCCACGCCAAAGCGCCCGAGAGGCACGGCCTACCCGTCCCGGTGCCGCATGCCGGGCGCGGCGTCGGATGAAATCGACGGCGCCGCACCCGAGCATTCCGGCCCTTCTCCCGGCCACGGTTTTTACGCCGCGACCCGCCTCAGCCGCGCCCCCACGCCAAAGCGCCCGAGAGGCACGGCCTACCCGTCCCGGTGCCGCATGCCGGGCGCGGCGTCGGATGAAATCGACGGCGCCGCACCCGAACATTCCGGCCCTTCTCCCGGCCACGGTTTTTACGCCGCGACCCGCCTCAGCCGCGCCCCCACGCCAAAGCGCCCGAGAGGCACGGCCTACGCTCCCCTCTCCCGGCCACGGTTTTTTACGCCGCGGCCCACCTCAGTTGCACCCCCACGCCAAAGCGCCCGAGAGGCGCAACCTACCGTCCCCTCTCCCGGCCACGGTTTTTACGCCGCGACCCGCCTCAGTCGCGCCCCCACGCCAAAGCGCCCGAGAGGCGCAACCTACCCGTCTCGGTGCCTCATGTCGGGCGCAGCGCTGGCCCTTCTCAGCGCCGCACTCACCGGCATTCCGGCCCGCCTCAGGGTTCCTCTTGGCTTCACCTGGGCGCCGCACGGCCCCACGTCCGACGCCCGAAGTCCCCGGCGGCGGGATGGGGACCCGCCGCCAAAAGGCCGCAGGGGTTGGGAGGTTCGGCACTCTCCCACCGACGCTCCCCCCCCCCACCGACCCTCCACGCCGCCGCCCGTGAGGGCAGCAGCGCCTCCCACTCGGGCCACTTCGTCCGGGCTGTCCACACACCCCGAGGAAGCGGCCCGTGGCCTCGGGAAGGGCGGCACCGGGAGTGCGCACCGGCGCCGCTACCGACCATACTGGCCCCGCCTCTGGGTTCCTCTTGGCTTCACCGACGCCGGTCGGGCCCTTGACCGGCGCCCAAGGCCCCCTGCGACGGGTGAGATCAGTGGCCCCGCCGCCAACCACGACGGCCGCAGGGGGAGGGAAGATTGGTTCGCCCGCACCGACACTCCCCCTCCCCCGCAGCCCCTCCACGCCGCCATCAGGCGCCACCGCCTCCCCAGGAGGACCGCAGCCCACCTCAGTTGCGCCGCCGCTCCGAGGGACGACGGCACCACCTACTCGGGCCACTTCGTCGCGGGTTGGAGCCTGAACCCGGAGAAGCAGCCCGTGGCCTCGGGAAGGGCAGCACCGGGAGCGCATCACCGGCGCCGCTGCCGACCATTCTGGCCCCGCCTCTGGGTTCCTCTTGGCTTCACCGTGGGTGTGTGTTTCTCCACCCACGGTTACTAA
- Protein Sequence
- MSAPQNDDDAPEHATHRRPPPSLGDLVQRTPVGPMTGAQRPPATGQVDGPAAHHDGRRGRKSISTASNTQPRCSPSHRGPPQWRRRPGGRQRHLHWPPRPRACCLQVGETAPSRCLMPGAASDEIDGAAPEHSGPSPGHGFYAATRLSRAPTPKRPRGTAYPSRCRMPGAASDEIDGAAPEHSGPSPGHGFYAATRLSRAPTPKRPRGTAYPSRCRMPGAASDEIDGAAPEHSGPSPGHGFYAATRLSRAPTPKRPRGTAYPSRCRMPGAASDEIDGAAPEHSGPSPGHGFYAATRLSRAPTPKRPRGTAYAPLSRPRFFTPRPTSVAPPRQSAREAQPTVPSPGHGFYAATRLSRAPTPKRPRGATYPSRCLMSGAALALLSAALTGIPARLRVPLGFTNDDDAPEHATHRRPPPSLGDLVQRTPVGPMTGAQGPLRRVGPVAPPPTTTAAGGEEGRLAPRQHSPPPEAPPRRHSPGRPRRGRRGKHPHGLQPPAAALELRRSPPQWRRRPGGRQRHLHGPPRPRACCLQVGETAPSRCLMPGAASDEIDGAAPEHSGPSPGHGFYAATRLSRAPTPKRPRGTAYPSRCRMPGAASDEIDGAAPEHSGPSPGHGFYAATRLSRAPTPKRPRGTAYPSRCRMPGAASDEIDGAAPEHSGPSPGHGFYAATRLSRAPTPKRPRGTAYPSRCRMPGAASDEIDGAAPEHSGPSPGHGFYAATRLSRAPTPKRPRGATYPSRCLMPGAALALLSAALTGIPARLRVPLGFTNDDDAPEHAAHRRPPPSLGDLVQRTPVGPMTGAQGPLRRVRGKASPRPLTLSRGAPRATAARLSGAAAPEDDSATYMGRLDHVLAACKWVRRPPPGASCRARRRMKSTAPHPKHSGPSPGHGFYAATRLSRAPTPKRPRGTAYPSRCRMPGAASDEIDGAAPEHSGPSPGHGFYAATRLSRAPTPKRPRGTAYPSRCRMPGAASDEIDGAAPEHSGPSPGHGFYAATRLSRAPTPKRPRGTAYAPLSRPRFFTPRPTSVAPPRQSAREAQPTVPSPGHGFYAATRLSRAPTPKRPRGATYPSRCLMSGAALALLSAALTGIPARLRVPLGFTWAPHGPTSDARSPRRRDGDPPPKGRRGWEVRHSPTDAPPPHRPSTPPPVRAAAPPTRATSSGLSTHPEEAARGLGKGGTGSAHRRRYRPYWPRLWVPLGFTDAGRALDRRPRPPATGEISGPAANHDGRRGREDWFARTDTPPPPQPLHAAIRRHRLPRRTAAHLSCAAAPRDDGTTYSGHFVAGWSLNPEKQPVASGRAAPGAHHRRRCRPFWPRLWVPLGFTVGVCFSTHGY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -