Zfil002056.1
Basic Information
- Insect
- Zygaena filipendulae
- Gene Symbol
- -
- Assembly
- GCA_907165275.1
- Location
- OU015665.1:11852094-11856100[-]
Transcription Factor Domain
- TF Family
- HMGA
- Domain
- HMGA domain
- PFAM
- AnimalTFDB
- TF Group
- Unclassified Structure
- Description
- This entry represents the HMGA family, whose members contain DNA-binding domains, also known as AT hooks due to their ability to interact with the narrow minor groove of AT-rich DNA sequences. They play an important role in chromatin organisation [1]. The high mobility group (HMG) proteins are the most abundant and ubiquitous nonhistone chromosomal proteins. They bind to DNA and to nucleosomes and are involved in the regulation of DNA-dependent processes such as transcription, replication, recombination, and DNA repair. They can be grouped into three families: HMGB (HMG 1/2), HMGN (HMG 14/17) and HMGA (HMG I/Y). The characteristic domains are: AT-hook for the HMGA family, the HMG Box for the HMGB family, and the nucleosome-binding domain (NBD) for the members of the HMGN family [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.00045 1 9.7 4.0 5 13 313 321 311 322 0.89 2 10 0.00045 1 9.7 4.0 5 13 363 371 361 372 0.89 3 10 0.00045 1 9.7 4.0 5 13 413 421 411 422 0.89 4 10 0.00045 1 9.7 4.0 5 13 463 471 461 472 0.89 5 10 0.0002 0.44 10.8 2.8 5 13 520 528 518 529 0.89 6 10 0.00045 1 9.7 4.0 5 13 710 718 708 719 0.89 7 10 0.00045 1 9.7 4.0 5 13 760 768 758 769 0.89 8 10 0.00045 1 9.7 4.0 5 13 810 818 808 819 0.89 9 10 0.00045 1 9.7 4.0 5 13 860 868 858 869 0.89 10 10 0.0002 0.44 10.8 2.8 5 13 917 925 915 926 0.89
Sequence Information
- Coding Sequence
- ATGACGACGATGCGCCGGAACACGCGACGCACCGCCGTCCTCCTCCTTCTCGGGGACCTTGTGCAAAGGACGCCGGTCGGGCCCATGACCGGCGCCCGAGGCCCCCTGCGACGAGTCGGGTCAGTGGCCCCGCCGCCCACCACGACGGCCGCAGAGGGTGAGGAGGGCCGACTAGCTCCGCGCCAGCACTCCCCTCCCCCCGCAGCCCCTCCACGCCGCCAATCACCGGGGCGGCCCCGTCGAGGCCGCAGAGGAAAACCATCTCCACGGCCTCTAACCCTCAGCCGCGGTGCTCCCCGAGCCACCGCGGCCCGCCTCAGTCGCGCCGCCGCTCCGAAGGGCGACGGCGCCACCTACTCGGGCCGCCTCATCACGGGTTTCCCCGAAAACCCGGAGAGGCGGCCCAGTGGCCTCGAGCCGGGCAGCGCCGGGAGCAGCTCAACCGGCGCCGCCGACTATACTGGCCCCGCCTCTGGGTTCCTCTTAGCTTCACCGCGGAATGACGACGATGCGCCGGAACACGCGACGCACCGCCGCCCTCCTCCCTCTCTCGGGGACCTTGTGCAAAGGACGCCGGTCGGGCCCATGACCGGCGCCCAAGGCCCCCTGCGACGGGTCAGCCCCTCCACGCCGCCAATCACCGGGGCGGCACCGTCGAGGCCGCAGAGGAAAAGCATCTCCACGGCCTCTAACACTCAGCCGCGGTGCTCCCCGAGCCACCGCGGCCCGCCTCAGTGGCGCCGCCGCCCCGGAGGACGACAGCGCCACCTACATGGGCCGCCTCGACCACGTGCTTGCTGCCTGCAAGTGGGTGAGACGGCCCCCTCCCGGTGCCTCATGCCGGGCGCGGCGTCGGATGAAATCGACGGCGCCGCACCCGAACATTCCGGCCCTTCTCCCGGCCACGGTTTTTACGCCGCGACCCGCCTCAGCCGCGCCCCCACGCCAAAGCGCCCGAGAGGCACGGCCTACCCGTCCCGGTGCCGCATGCCGGGCGCGGCGTCGGATGAAATCGACGGCGCCGCACCCGAGCATTCCGGCCCTTCTCCCGGCCACGGTTTTTACGCCGCGACCCGCCTCAGCCGCGCCCCCACGCCAAAGCGCCCGAGAGGCACGGCCTACCCGTCCCGGTGCCGCATGCCGGGCGCGGCGTCGGATGAAATCGACGGCGCCGCACCCGAACATTCCGGCCCTTCTCCCGGCCACGGTTTTTACGCCGCGACCCGCCTCAGCCGCGCCCCCACGCCAAAGCGCCCGAGAGGCACGGCCTACCCGTCCCGGTGCCGCATGCCGGGCGCGGCGTCGGATGAAATCGACGGCGCCGCACCCGAACATTCCGGCCCTTCTCCCGGCCACGGTTTTTACGCCGCGACCCGCCTCAGCCGCGCCCCCACGCCAAAGCGCCCGAGAGGCACGGCCTACGCTCCCCTCTCCCGGCCACGGTTTTTTACGCCGCGGCCCACCTCAGTTGCACCCCCACGCCAAAGCGCCCGAGAGGCGCAACCTACCGTCCCCTCTCCCGGCCACGGTTTTTACGCCGCGACCCGCCTCAGTCGCGCCCCCACGCCAAAGCGCCCGAGAGGCGCAACCTACCCGTCTCGGTGCCTCATGTCGGGCGCAGCGCTGGCCCTTCTCAGCGCCGCACTCACCGGCATTCCGGCCCGCCTCAGGGTTCCTCTTGGCTTCACCAATGACGACGATGCGCCGGAACACGCGACGCACCGCCGCCCTCCTCCCTCTCTCGGGGACCTTGTGCAAAGGACGCCGGTCGGGCCCATGACCGGCGCCCAAGGCCCCCTGCGACGGGTCAGCCCCTCCACGCCGCCAATCACCGGGGCGGCACCGTCGAGGCCGCAGAGGAAAAGCATCTCCACGGCCTCTAACACTCAGCCGCGGTGCTCCCCGAGCCACCGCGGCCCGCCTCAGTGGCGCCGCCGCCCCGGAGGACGACAGCGCCACCTACATGGGCCGCCTCGACCACGTGCTTGCTGCCTGCAAGTGGGTGAGACGGCCCCCTCCCGGTGCCTCATGCCGGGCGCGGCGTCGGATGAAATCGACGGCGCCGCACCCGAACATTCCGGCCCTTCTCCCGGCCACGGTTTTTACGCCGCGACCCGCCTCAGCCGCGCCCCCACGCCAAAGCGCCCGAGAGGCACGGCCTACCCGTCCCGGTGCCGCATGCCGGGCGCGGCGTCGGATGAAATCGACGGCGCCGCACCCGAGCATTCCGGCCCTTCTCCCGGCCACGGTTTTTACGCCGCGACCCGCCTCAGCCGCGCCCCCACGCCAAAGCGCCCGAGAGGCACGGCCTACCCGTCCCGGTGCCGCATGCCGGGCGCGGCGTCGGATGAAATCGACGGCGCCGCACCCGAACATTCCGGCCCTTCTCCCGGCCACGGTTTTTACGCCGCGACCCGCCTCAGCCGCGCCCCCACGCCAAAGCGCCCGAGAGGCACGGCCTACCCGTCCCGGTGCCGCATGCCGGGCGCGGCGTCGGATGAAATCGACGGCGCCGCACCCGAACATTCCGGCCCTTCTCCCGGCCACGGTTTTTACGCCGCGACCCGCCTCAGCCGCGCCCCCACGCCAAAGCGCCCGAGAGGCACGGCCTACGCTCCCCTCTCCCGGCCACGGTTTTTTACGCCGCGGCCCACCTCAGTTGCACCCCCACGCCAAAGCGCCCGAGAGGCGCAACCTACCGTCCCCTCTCCCGGCCACGGTTTTTACGCCGCGACCCGCCTCAGTCGCGCCCCCACGCCAAAGCGCCCGAGAGGCGCAACCTACCCGTCTCGGTGCCTCATGTCGGGCGCAGCGCTGGCCCTTCTCAGCGCCGCACTCACCGGCATTCCGGCCCGCCTCAGGGTTCCTCTTGGCTTCACCGTGGGTGGACAGTACCCACGGCTACTAAGCCCCCCCGCCACGACAAGGCGGGAACCCAATTCGGGGGGGGGAACCCAATTCGGGGGGGAACCTAACCTAACCTAA
- Protein Sequence
- MTTMRRNTRRTAVLLLLGDLVQRTPVGPMTGARGPLRRVGSVAPPPTTTAAEGEEGRLAPRQHSPPPAAPPRRQSPGRPRRGRRGKPSPRPLTLSRGAPRATAARLSRAAAPKGDGATYSGRLITGFPENPERRPSGLEPGSAGSSSTGAADYTGPASGFLLASPRNDDDAPEHATHRRPPPSLGDLVQRTPVGPMTGAQGPLRRVSPSTPPITGAAPSRPQRKSISTASNTQPRCSPSHRGPPQWRRRPGGRQRHLHGPPRPRACCLQVGETAPSRCLMPGAASDEIDGAAPEHSGPSPGHGFYAATRLSRAPTPKRPRGTAYPSRCRMPGAASDEIDGAAPEHSGPSPGHGFYAATRLSRAPTPKRPRGTAYPSRCRMPGAASDEIDGAAPEHSGPSPGHGFYAATRLSRAPTPKRPRGTAYPSRCRMPGAASDEIDGAAPEHSGPSPGHGFYAATRLSRAPTPKRPRGTAYAPLSRPRFFTPRPTSVAPPRQSAREAQPTVPSPGHGFYAATRLSRAPTPKRPRGATYPSRCLMSGAALALLSAALTGIPARLRVPLGFTNDDDAPEHATHRRPPPSLGDLVQRTPVGPMTGAQGPLRRVSPSTPPITGAAPSRPQRKSISTASNTQPRCSPSHRGPPQWRRRPGGRQRHLHGPPRPRACCLQVGETAPSRCLMPGAASDEIDGAAPEHSGPSPGHGFYAATRLSRAPTPKRPRGTAYPSRCRMPGAASDEIDGAAPEHSGPSPGHGFYAATRLSRAPTPKRPRGTAYPSRCRMPGAASDEIDGAAPEHSGPSPGHGFYAATRLSRAPTPKRPRGTAYPSRCRMPGAASDEIDGAAPEHSGPSPGHGFYAATRLSRAPTPKRPRGTAYAPLSRPRFFTPRPTSVAPPRQSAREAQPTVPSPGHGFYAATRLSRAPTPKRPRGATYPSRCLMSGAALALLSAALTGIPARLRVPLGFTVGGQYPRLLSPPATTRREPNSGGGTQFGGEPNLT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -