Zfil002049.1
Basic Information
- Insect
- Zygaena filipendulae
- Gene Symbol
- -
- Assembly
- GCA_907165275.1
- Location
- OU015665.1:11822836-11831563[-]
Transcription Factor Domain
- TF Family
- HMGA
- Domain
- HMGA domain
- PFAM
- AnimalTFDB
- TF Group
- Unclassified Structure
- Description
- This entry represents the HMGA family, whose members contain DNA-binding domains, also known as AT hooks due to their ability to interact with the narrow minor groove of AT-rich DNA sequences. They play an important role in chromatin organisation [1]. The high mobility group (HMG) proteins are the most abundant and ubiquitous nonhistone chromosomal proteins. They bind to DNA and to nucleosomes and are involved in the regulation of DNA-dependent processes such as transcription, replication, recombination, and DNA repair. They can be grouped into three families: HMGB (HMG 1/2), HMGN (HMG 14/17) and HMGA (HMG I/Y). The characteristic domains are: AT-hook for the HMGA family, the HMG Box for the HMGB family, and the nucleosome-binding domain (NBD) for the members of the HMGN family [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 0.00091 2 8.7 4.0 5 13 132 140 130 141 0.89 2 21 0.00091 2 8.7 4.0 5 13 182 190 180 191 0.89 3 21 0.00091 2 8.7 4.0 5 13 232 240 230 241 0.89 4 21 0.0004 0.9 9.8 2.8 5 13 289 297 287 298 0.89 5 21 0.00091 2 8.7 4.0 5 13 507 515 505 516 0.89 6 21 0.00091 2 8.7 4.0 5 13 557 565 555 566 0.89 7 21 0.00091 2 8.7 4.0 5 13 607 615 605 616 0.89 8 21 0.0004 0.9 9.8 2.8 5 13 664 672 662 673 0.89 9 21 0.029 65 3.9 2.9 5 13 854 862 852 863 0.89 10 21 0.00091 2 8.7 4.0 5 13 954 962 952 963 0.89 11 21 0.00043 0.95 9.7 2.9 6 13 1005 1012 1002 1017 0.88 12 21 0.00091 2 8.7 4.0 5 13 1196 1204 1194 1205 0.89 13 21 0.00091 2 8.7 4.0 5 13 1246 1254 1244 1255 0.89 14 21 0.00091 2 8.7 4.0 5 13 1296 1304 1294 1305 0.89 15 21 0.00091 2 8.7 4.0 5 13 1346 1354 1344 1355 0.89 16 21 0.0004 0.9 9.8 2.8 5 13 1403 1411 1401 1412 0.89 17 21 0.00091 2 8.7 4.0 5 13 1593 1601 1591 1602 0.89 18 21 0.00091 2 8.7 4.0 5 13 1643 1651 1641 1652 0.89 19 21 0.00091 2 8.7 4.0 5 13 1693 1701 1691 1702 0.89 20 21 0.00091 2 8.7 4.0 5 13 1743 1751 1741 1752 0.89 21 21 0.0004 0.9 9.8 2.8 5 13 1800 1808 1798 1809 0.89
Sequence Information
- Coding Sequence
- ATGACGACGATGCGCCGGAACACGCGACGCACCGCCGCCCTCCTCCCTCTCTCGGGGACCTTGTGCAGAGGACGCCGCCCCTCCACGCCGCCGATCACCGGGGCGGCCCCGTCGAGGCCGCAGAGGAAAAGCATCTCCACGGCCTCTAACACTCAGCCGCGGTGCTCCCCGAGCCACCGCGGCCCGCCTCAGTGGCGCCGCCGCCCCGGAGGACGACAGCGCCACCTACATGGGCCGCCTCGACCAAGTGCTTGCTGCCTGCAAGTGGGTGAGACGGCCCCCTCCCGGTGCCTCATGCCGGGCGCGGCGTCGGATGAAATCGACGGCGCCGCACCCGAACATTCCGGCCCTTCTCCCGGCCACGGTTTTTACGCCGCGACCCGCCTCAGCCGAGCCCCCACGCCAAAGCGCCCGAGAGGCACGGCCTACCCGTCCCGGTGCCGCATGCCGGGCGCGGCGTCGGATGAAATCGACGGCGCCGCACCCGAGCATTCCGGCCCTTCTCCCGGCCACGGTTTTTACGCCGCGACCCGCCTCAGCCGCGCCCCCACGCCAAAGCGCCCGAGAGGCACGGCCTACCCGTCCCGGTGCCGCATGCCGGGCGCGGCGTCGGATGAAATCGACGGCGCCGCACCCGAACATTCCGGCCCTTCTCCCGGCCACGGTTTTTACGCCGCGACCCGCCTCAGCCGCGCCCCCACGCCAAAGCGCCCGAGAGGCACGGCCTACGCTCCCCTCTCCCGGCCACGGTTTTTTACGCCGCGGCCCACCTCAGTTGCACCCCCACGCCAAAGCGCCCGAGAGGCGCAACCTACCGTCCCCTCTCCCGGCCACGGTTTTTACGCCGCGACCCGCCTCAGCCGCGCCCCCACGCCAAAGCGCCCGAGAGGCGCAACCTACCCGTCTCGGTGCCTCATGTCGGGCGCAGCGCTGGCCCTTCTCAGCGCCGCACTCACCGGCATTCCGGCCCGCCTCAGGGTTCCTCTTGGCTTCACCAATGACGACGATGCGCCGGAACACGCGACGCACCGCCGCCCTCCTCCCTCTCTCGGGGACCTTGTGCAGAGGACGCCGGTCGGGCCCATGACCGGCGCCCAAGGCCCCCTGCGACGGGTCGGGCCAGTGGCCCCGCCGCCCACCACGACGGCCGCAGGGGGTGAGGAGGGCCGACTAGCTCCGCGCCAGCACTCCCCTCCCCCCGAAGCCCCTCCACGCCGCCACTCACCGGGGCGGCCCCGTCGAGGTCGCAGAGGAAAACACCCCCACGGCCTCCAACCCCCGGCCGCGGCGCTCGAGCTACGCCGCAGCCCGCCTCAGTGGCGCCGCCGCCCCGGAGGACGACAGCGCCACCTACAAGGGCCGCCTCGACCACGTGCTTGCTGCCTGCAAGTGGGTGAGACGGCCCCCTCCCGGTGCCTCATGCCGGGCGCGGCGTCGGATGAAATCGACGGCGCCGCACCCGAACATTCCGGCCCTTCTCCCGGCCACGGTTTTTACGCCGCGACCCGCCTCAGCCGCGCCCCCACGCCAAAGCGCCCGAGAGGCACGGCCTACCCGTCCCGGTGCCGCATGCCGGGCGCGGCGTCGGATGAAATCGACGGCGCCGCACCCGAGCATTCCGGCCCTTCTCCCGGCCACGGTTTTTACGCCGCGACCCGCCTCAGCCGCGCCCCCACGCCAAAGCGCCCGAGAGGCACGGCCTACCCGTCCCGGTGCCGCATGCCGGGCGCGGCGTCGGATGAAATCGACGGCGCCGCACCCGAACATTCCGGCCCTTCTCCCGGCCACGGTTTTTACGCCGCGACCCGCCTCAGCCGCGCCCCCACGCCAAAGCGCCCGAGAGGCACGGCCTACGCTCCCCTCTCCCGGCCACGGTTTTTTACGCCGCGGCCCACCTCAGTTGCACCCCCACGCCAAAGCGCCCGAGAGGCGCAACCTACCGTCCCCTCTCCCGGCCACGGTTTTTACGCCGCGACCCGCCTCAGTCGCGCCCCCACGCCAAAGCGCCCGAGAGGCGCAACCTACCCGTCTCGGTGCCTCATGTCGGGCGCAGCGCTGGCCCTTCTCAGCGCCGCACTCACCGGCATTCCGGCCCGCCTCAGGGTTCCTCTTGGCTTCACCAATGACGACGATGCGCCGGAACACGCGACGCACCGCCGCCCTCCTCCCTCTCTCGGGGACCTTGTGCAAAGGACGCCGGTCGGGCCCATGACCGGCGCCCAAGGCCCCCTGCGACGGGTCAGCCCCTCCACGCCGCCAATCACCGGGGCGGCACCGTCGAGGCCGCAGAGGAAAAGCATCTCCACGGCCTCTAACACTCAGCCGCGGTGCTCCCCGAGCCACCGCGGCCCGCCTCAGTGGCGCCGCCGCCCCGGAGGACGACAGCGCCACCTACATGGGCCGCCTCGACCACGTGCTTGCCGCCTGCAAGTGGGTGAGACGGCCCCCTCCCGGTGCCTCATGCCGGGCGCGGCGTCGGATGAAATCGACGGCGCCGCACCCGAACATTCCGGCCCTTCTCCCGGCCACGGTTTTTACGCCGCGACCCGCCTCAGCCGCGCCCCCACGCCAGAGCGCCCGAGAGGCACGGCCTACCCGTCCCGGTGCCGCATGCCGGGCGCGGCGTCGGATGAAATCGACGGCGCCGCACCCGAACATTCCGGACCTTCTCCCGGCCACGGTTTTTTACGCCGCGACCCGCCTCAGCCGCGCCCCCACGCCAAAGCGCCCGAGAGGCACAGCCTACCCGTCCCGTGCCGCATGCCGGGCGCGGCGTCGGATGAAATCGACGGCGCCGCACCCGAACATTCCGGCCCTTCTCCCGGCCACGGTTTTTACGCCGCGACCCGCCTCAGCCGCGCCCCCACGCCAAAGCGCCCGAGAGGCACGGCCTACCCGTCCCGGTGCCGCATGCCGGGCGCGGCGTCGGATGAAATCGACGGCGCCGCACCCGAACATTCCGGACCTTCTCCCGGCCACGGTTTTTACGCCGCGGCCCACCTCAGTTGCACCCCCACGCCAAAGCGCCCGAGAGGCGCAACCTACCGTCCCCTCTCCCGGCCACGGTTTTTACGCCGCGACCCGCCTCAGCCGCGCCCCCACGCCAAAGCGCCCGAGAGGCACGGCCTACCCGTCTCGGCGCCTCATAATGACGACGATGCGCCGGAACACGCGACGCACCGCCGCCCTCCTCCCTCTCTCGGGGACCTTGTGCAAAGGACGCCGGTCGGGCCCATGACCGGCGCCCAAGGCCCCCTGCGACGGGTCAGCCCCTCCACGCCGCCAATCACCGGGGCGGCACCGTCGAGGCCGCAGAGGAAAAGCATCTCCACGGCCTCTAACACTCAGCCGCGGTGCTCCCCGAGCCACCGCGGCCCGCCTCAGTGGCGCCGCCGCCCCGGAGGACGACAGCGCCCCCTACATGGGCCGCCCCGACCACGTGCTTGCTGCCTGCAAGTGGGTGAGACGGCCCCCTCCCGGTGCCTCATGCCGGGCGCGGCGTCGGATGAAATCGACGGCGCCGCACCCGAACATTCCGGCCCTTCTCCCGGCCACGGTTTTTACGCCGCGACCCGCCTCAGCCGCGCCCCCACGCCAAAGCGCCCGAGAGGCACGGCCTACCCGTCCCGGTGCCGCATGCCGGGCGCGGCGTCGGATGAAATCGACGGCGCCGCACCCGAGCATTCCGGCCCTTCTCCCGGCCACGGTTTTTACGCCGCGACCCGCCTCAGCCGCGCCCCCACGCCAAAGCGCCCGAGAGGCACGGCCTACCCGTCCCGGTGCCGCATGCCGGGCGCGGCGTCGGATGAAATCGACGGCGCCGCACCCGAACATTCCGGCCCTTCTCCCGGCCACGGTTTTTACGCCGCGACCCGCCTCAGCCGCGCCCCCACGCCAAAGCGCCCGAGAGGCACGGCCTACCCGTCCCGGTGCCGCATGCCGGGCGCGGCGTCGGATGAAATCGACGGCGCCGCACCCGAACATTCCGGCCCTTCTCCCGGCCACGGTTTTTACGCCGCGACCCGCCTCAGCCGCGCCCCCACGCCAAAGCGCCCGAGAGGCACGGCCTACGCTCCCCTCTCCCGGCCACGGTTTTTTACGCCGCGGCCCACCTCAGTTGCACCCCCACGCCAAAGCGCCCGAGAGGCGCAACCTACCGTCCCCTCTCCCGGCCACGGTTTTTACGCCGCGACCCGCCTCAGTCGCGCCCCCACGCCAAAGCGCCCGAGAGGCGCAACCTACCCGTCTCGGTGCCTCATGTCGGGCGCAGCGCTGGCCCTTCTCAGCGCCGCACTCACCGGCATTCCGGCCCGCCTCAGGGTTCCTCTTGGCTTCACCAATGACGACGATGCGCCGGAACACGCGACGCACCGCCGCCCTCCTCCCTCTCTCGGGGACCTTGTGCAAAGGACGCCGGTCGGGCCCATGACCGGCGCCCAAGGCCCCCTGCGACGGGTCAGCCCCTCCACGCCGCCAATCACCGGGGCGGCACCGTCGAGGCCGCAGAGGAAAAGCATCTCCACGGCCTCTAACACTCAGCCGCGGTGCTCCCCGAGCCACCGCGGCCCGCCTCAGTGGCGCCGCCGCCCCGGAGGACGACAGCGCCACCTACATGGGCCGCCTCGACCACGTGCTTGCTGCCTGCAAGTGGGTGAGACGGCCCCCTCCCGGTGCCTCATGCCGGGCGCGGCGTCGGATGAAATCGACGGCGCCGCACCCGAACATTCCGGCCCTTCTCCCGGCCACGGTTTTTACGCCGCGACCCGCCTCAGCCGCGCCCCCACGCCAAAGCGCCCGAGAGGCACGGCCTACCCGTCCCGGTGCCGCATGCCGGGCGCGGCGTCGGATGAAATCGACGGCGCCGCACCCGAGCATTCCGGCCCTTCTCCCGGCCACGGTTTTTACGCCGCGACCCGCCTCAGCCGCGCCCCCACGCCAAAGCGCCCGAGAGGCACGGCCTACCCGTCCCGGTGCCGCATGCCGGGCGCGGCGTCGGATGAAATCGACGGCGCCGCACCCGAACATTCCGGCCCTTCTCCCGGCCACGGTTTTTACGCCGCGACCCGCCTCAGCCGCGCCCCCACGCCAAAGCGCCCGAGAGGCACGGCCTACCCGTCCCGGTGCCGCATGCCGGGCGCGGCGTCGGATGAAATCGACGGCGCCGCACCCGAACATTCCGGCCCTTCTCCCGGCCACGGTTTTTACGCCGCGACCCGCCTCAGCCGCGCCCCCACGCCAAAGCGCCCGAGAGGCACGGCCTACGCTCCCCTCTCCCGGCCACGGTTTTTTACGCCGCGGCCCACCTCAGTTGCACCCCCACGCCAAAGCGCCCGAGAGGCGCAACCTACCGTCCCCTCTCCCGGCCACGGTTTTTACGCCGCGACCCGCCTCAGTCGCGCCCCCACGCCAAAGCGCCCGAGAGGCGCAACCTACCCGTCTCGGTGCCTCATGTCGGGCGCAGCGCTGGCCCTTCTCAGCGCCGCACTCACCGGCATTCCGGCCCGCCTCAGGGTTCCTCTTGGCTTCACCGTAAAGGCGCGCCGGGATGTCCGGAACGCGCCTTTCTTCCTCGTGCTCCTTGATGAGGACGCCCGTCCCCACGGAACGCCCCCAGGAGCAACGAAGGTGGGTGAGGGGGGTGTCAGCTCGCGTCCATCGCTCCCTCTGAAAGCAGAGGGTCGCGGGAACGGGCTGTCCCAGCCTGTGCCACCGTCGCGGGTGACTCTTGCCCAGCCACGGGCCGGGCAGCACCGACGGCAACCGGAGTCACTCCGGTTGTCTTAG
- Protein Sequence
- MTTMRRNTRRTAALLPLSGTLCRGRRPSTPPITGAAPSRPQRKSISTASNTQPRCSPSHRGPPQWRRRPGGRQRHLHGPPRPSACCLQVGETAPSRCLMPGAASDEIDGAAPEHSGPSPGHGFYAATRLSRAPTPKRPRGTAYPSRCRMPGAASDEIDGAAPEHSGPSPGHGFYAATRLSRAPTPKRPRGTAYPSRCRMPGAASDEIDGAAPEHSGPSPGHGFYAATRLSRAPTPKRPRGTAYAPLSRPRFFTPRPTSVAPPRQSAREAQPTVPSPGHGFYAATRLSRAPTPKRPRGATYPSRCLMSGAALALLSAALTGIPARLRVPLGFTNDDDAPEHATHRRPPPSLGDLVQRTPVGPMTGAQGPLRRVGPVAPPPTTTAAGGEEGRLAPRQHSPPPEAPPRRHSPGRPRRGRRGKHPHGLQPPAAALELRRSPPQWRRRPGGRQRHLQGPPRPRACCLQVGETAPSRCLMPGAASDEIDGAAPEHSGPSPGHGFYAATRLSRAPTPKRPRGTAYPSRCRMPGAASDEIDGAAPEHSGPSPGHGFYAATRLSRAPTPKRPRGTAYPSRCRMPGAASDEIDGAAPEHSGPSPGHGFYAATRLSRAPTPKRPRGTAYAPLSRPRFFTPRPTSVAPPRQSAREAQPTVPSPGHGFYAATRLSRAPTPKRPRGATYPSRCLMSGAALALLSAALTGIPARLRVPLGFTNDDDAPEHATHRRPPPSLGDLVQRTPVGPMTGAQGPLRRVSPSTPPITGAAPSRPQRKSISTASNTQPRCSPSHRGPPQWRRRPGGRQRHLHGPPRPRACRLQVGETAPSRCLMPGAASDEIDGAAPEHSGPSPGHGFYAATRLSRAPTPERPRGTAYPSRCRMPGAASDEIDGAAPEHSGPSPGHGFLRRDPPQPRPHAKAPERHSLPVPCRMPGAASDEIDGAAPEHSGPSPGHGFYAATRLSRAPTPKRPRGTAYPSRCRMPGAASDEIDGAAPEHSGPSPGHGFYAAAHLSCTPTPKRPRGATYRPLSRPRFLRRDPPQPRPHAKAPERHGLPVSAPHNDDDAPEHATHRRPPPSLGDLVQRTPVGPMTGAQGPLRRVSPSTPPITGAAPSRPQRKSISTASNTQPRCSPSHRGPPQWRRRPGGRQRPLHGPPRPRACCLQVGETAPSRCLMPGAASDEIDGAAPEHSGPSPGHGFYAATRLSRAPTPKRPRGTAYPSRCRMPGAASDEIDGAAPEHSGPSPGHGFYAATRLSRAPTPKRPRGTAYPSRCRMPGAASDEIDGAAPEHSGPSPGHGFYAATRLSRAPTPKRPRGTAYPSRCRMPGAASDEIDGAAPEHSGPSPGHGFYAATRLSRAPTPKRPRGTAYAPLSRPRFFTPRPTSVAPPRQSAREAQPTVPSPGHGFYAATRLSRAPTPKRPRGATYPSRCLMSGAALALLSAALTGIPARLRVPLGFTNDDDAPEHATHRRPPPSLGDLVQRTPVGPMTGAQGPLRRVSPSTPPITGAAPSRPQRKSISTASNTQPRCSPSHRGPPQWRRRPGGRQRHLHGPPRPRACCLQVGETAPSRCLMPGAASDEIDGAAPEHSGPSPGHGFYAATRLSRAPTPKRPRGTAYPSRCRMPGAASDEIDGAAPEHSGPSPGHGFYAATRLSRAPTPKRPRGTAYPSRCRMPGAASDEIDGAAPEHSGPSPGHGFYAATRLSRAPTPKRPRGTAYPSRCRMPGAASDEIDGAAPEHSGPSPGHGFYAATRLSRAPTPKRPRGTAYAPLSRPRFFTPRPTSVAPPRQSAREAQPTVPSPGHGFYAATRLSRAPTPKRPRGATYPSRCLMSGAALALLSAALTGIPARLRVPLGFTVKARRDVRNAPFFLVLLDEDARPHGTPPGATKVGEGGVSSRPSLPLKAEGRGNGLSQPVPPSRVTLAQPRAGQHRRQPESLRLS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -