Zmor041547.1
Basic Information
- Insect
- Zophobas morio
- Gene Symbol
- -
- Assembly
- GCA_027724725.1
- Location
- JALNTZ010000005.1:29762275-29763441[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 6 0.0067 70 4.8 0.1 27 49 135 157 130 159 0.85 2 6 0.0054 56 5.1 0.0 27 49 201 223 197 226 0.92 3 6 0.69 7.1e+03 -1.6 0.0 32 49 270 287 264 294 0.75 4 6 0.0058 60 5.0 0.1 27 49 297 319 288 324 0.88 5 6 0.0045 47 5.4 0.0 25 49 330 351 325 356 0.80 6 6 0.003 32 5.9 0.0 27 51 361 385 358 387 0.83
Sequence Information
- Coding Sequence
- ATGGCCAGACGCCCCCATTCATCACCCCTGTCATTCAACTGTGAAAACGCCACCATCGAAACCTACCGTTGCAAAGACTGTGCTTTCCGAACAGACTTGACGTTTTTGTTCAAACACCACATTGCCACCTACCATGGCGTCAAAAAAGAAAACGGAAATGAAGGAATTTTCATCCAGAACTACGTCTGCGAGAAATGCGGCTTCGACACACATTTCCTGATTAAATGGCTTCAGCACACAATCGCGTGTTTCAGTGGTGAAGAGAGTTCCAAAATTTTGAACAGTAGCAGGAAAAGTCTCACCAGAATGTACAACTGCAAGCAGTGTGGACGCATTTTCAAGTACAAAAATTTTGCTAAAATGCACACAAATTGCACAACGAATGATCAACTGTGGTTTCAGTGTGAAAAGTGTTCGTACAAATCTAAACAAAAAGGGAATTTAAAAAGACACATTTATTCCCGACATGTGGATGTAAATACTCAGAGTATCAGATGGCATAAGTGCAAAAAGTGTCCATACAAATCTAAACACAAAACGTGTTTAAAAACACACATAATCGCCCGACATTTGGATGCAAAAGATATTAAATGGTTCAAGTGTAAAATATGCCCGTATAAAGCTAAACAGAATTCCGATTTAACTAAACACATAAATGCGCGACATATGGATGGGAAGGATATTAAATGGTACGAGTGCCAATTCTGCCCATACAAAGGTAAAAAAAACTCTCATTTAAAAAGTCACGTAATCGCGCGACATTTAGACGAAAAAGATATGAAATGGTACGAATGCAAACAGTGCCCATATAAAGCTAAATACAGTTCATCTTTAAAAAAGCACATAAATGCACACCATTTAGAAGAACGGGATACTAAATGGTACGAATGCAAAGTTTGCCCATTTAAAGCAAAACAAAGCTCTTGTTTAAAAAGGCACGTTAATTCCATGCATTTGGACGAAAGTGATGTCAAGTGGTATGAATGTGCAACGTGTCCGTATAAAGCTAAACAAAAAGCTGCCCTAAAAAGACACATAATGCTGCAGCATTTAAATGATGAGGACATTAAATGGTATAAGTGCAGTGATTGTTCATACAAAGCTAAACAAAAAGCGCATTTGAAGAAACACATTAATGCGCGACATTTCGATGAGAAAGGTGATTAA
- Protein Sequence
- MARRPHSSPLSFNCENATIETYRCKDCAFRTDLTFLFKHHIATYHGVKKENGNEGIFIQNYVCEKCGFDTHFLIKWLQHTIACFSGEESSKILNSSRKSLTRMYNCKQCGRIFKYKNFAKMHTNCTTNDQLWFQCEKCSYKSKQKGNLKRHIYSRHVDVNTQSIRWHKCKKCPYKSKHKTCLKTHIIARHLDAKDIKWFKCKICPYKAKQNSDLTKHINARHMDGKDIKWYECQFCPYKGKKNSHLKSHVIARHLDEKDMKWYECKQCPYKAKYSSSLKKHINAHHLEERDTKWYECKVCPFKAKQSSCLKRHVNSMHLDESDVKWYECATCPYKAKQKAALKRHIMLQHLNDEDIKWYKCSDCSYKAKQKAHLKKHINARHFDEKGD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01568388;
- 90% Identity
- iTF_01568388;
- 80% Identity
- iTF_01568388;