Zmor001798.1
Basic Information
- Insect
- Zophobas morio
- Gene Symbol
- -
- Assembly
- GCA_027724725.1
- Location
- JALNTZ010000001.1:23878714-23880545[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.044 4.6e+02 2.2 0.0 26 45 163 182 159 189 0.88 2 9 0.079 8.2e+02 1.4 0.1 26 53 277 304 271 305 0.87 3 9 0.071 7.4e+02 1.5 0.0 22 54 301 333 296 333 0.86 4 9 0.0046 48 5.3 0.0 23 48 330 355 326 361 0.85 5 9 0.016 1.6e+02 3.6 0.0 21 48 356 382 352 385 0.87 6 9 0.009 93 4.4 0.1 23 46 414 437 407 443 0.81 7 9 0.053 5.5e+02 2.0 0.0 21 46 440 465 432 473 0.78 8 9 0.00095 9.8 7.6 0.0 21 52 468 499 460 501 0.86 9 9 0.0011 11 7.3 0.0 21 43 496 518 493 524 0.91
Sequence Information
- Coding Sequence
- ATGTTTGAAGAAAATTCGCGAAACCTTTGCCGAGCCTGTTTGACGGAAACGGGTGAATTCCAATCAATATTTGTGCCAGACGAAGAAACGGGGCTTTCAATACATCTTTCAGAAATGATAATGGCTTTTGCTTCAGTCCAGGTAACACTTGGAGACGGTCTACCTGAAACGATATGTTCAACATGCGCCAAAGATACCGTAAAATTGTATTTATATAAATTAAAGTGTGAAGAATCGGATAAAACGCTACGAAATCAATTAGGTAAAAGCCCCCCCATAGAACCTTGTACAGCGGAAGAGAAACCTTGCGTAGAGGATAACGATAACGTGGACGTTTTTAACATAGTGATTAAGCCAGAATTAAATTCGGAAGATTCGCAAATTCATCAGGATGTGGATGATGACTATGACGGTTTTAATATTCAAGAGAAAAGTGATAGTGATGTAGAAGCTACTGAGCTGATTCCAAATAACAGTGGAGAATTTAAATGCCCCCATTGTCATAAAATATTTAATAAAGAAACCACATTAAACCGTCATGTTAAAACACACACAGCAATTAAAGCATATAAGTGTAATATTTGTAACAAATCCTTCTCTCGTAATGATTTGTTGTTACGACATAAAATAGCACATGCAATGAAAATGGCAGATCAGTCTTTTGAATACGATAATAATAGTGATGATGCAGATCAGGATGATGAAGGTGAAACAGTTGTAGTCAAAACAGAAACTGCTTTATATCCTTGTGCAGAGTGCAACCTGATATTTGTAAAAAGGGATGAATTAGATGCACATGTTCAGGAACATAAAGGCAAAAGTGATATAAtttgtaaaatttgtggaaaaaaatttagtaaacaggctcacctcaataggcatatgaagatacattcacaaaataaaccttatgtgtgttccacttgtaataaagggtttgtcagatctgaacaacttaacaaccatatgaacatacattctggcattaaaccacatgtttgtgctatctgtttgaaaGGCTTCAACCAAATATCAAATTTAAAGGACCATATGCGCACAcacaatggagaaaaacctttcctatgttctacatgtggaaaggggttcaaccaattaggtaatcttcgccaacacaccattagacatagtggcatcaaagctcacctctgtagtacatgtggaaatggtttTGCAAGTAAAGGAGAACTATCAGCTCATCTTCGTAAACATACAGGTGCTcgtccatttgtgtgccccatatgcaatcatggttttacaacttcaagttctttaacaaaacataaacgaattcattcaggagaaaaaccatatgagtgtgatgtatgtaaaatgaaattttcaaggtcagggattttagcgagacataaacggacccatacaggagaaaaaccatatgtttgcaagttttgcactaaggcgttttcacagtcaaatgatttaacttcacatttacgaattcatactggtgaaaaaccttacatttgtgacgtttgtggacaagcatttagacaaagttcagctttaaagacacataagaaaactcacattgacaggaatcctatactggatacaaagcctctcataggggttttgcatgCGCCGTTTTATAATGTTAACAGTATAATGAATGCCAATTAA
- Protein Sequence
- MFEENSRNLCRACLTETGEFQSIFVPDEETGLSIHLSEMIMAFASVQVTLGDGLPETICSTCAKDTVKLYLYKLKCEESDKTLRNQLGKSPPIEPCTAEEKPCVEDNDNVDVFNIVIKPELNSEDSQIHQDVDDDYDGFNIQEKSDSDVEATELIPNNSGEFKCPHCHKIFNKETTLNRHVKTHTAIKAYKCNICNKSFSRNDLLLRHKIAHAMKMADQSFEYDNNSDDADQDDEGETVVVKTETALYPCAECNLIFVKRDELDAHVQEHKGKSDIICKICGKKFSKQAHLNRHMKIHSQNKPYVCSTCNKGFVRSEQLNNHMNIHSGIKPHVCAICLKGFNQISNLKDHMRTHNGEKPFLCSTCGKGFNQLGNLRQHTIRHSGIKAHLCSTCGNGFASKGELSAHLRKHTGARPFVCPICNHGFTTSSSLTKHKRIHSGEKPYECDVCKMKFSRSGILARHKRTHTGEKPYVCKFCTKAFSQSNDLTSHLRIHTGEKPYICDVCGQAFRQSSALKTHKKTHIDRNPILDTKPLIGVLHAPFYNVNSIMNAN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01410169;
- 90% Identity
- iTF_01568245;
- 80% Identity
- iTF_01568245;