Basic Information

Insect: Zophobas morio
Gene Symbol: SCRT1
Assembly: GCA_027724725.1
Location: JALNTZ010000002.1:74085745-74088808[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 4.5 2.7e+02 3.5 0.1 2 16 58 72 57 74 0.76

2 13 0.00056 0.034 15.8 0.1 1 23 283 305 283 305 0.95

3 13 3.6e-05 0.0022 19.5 1.5 1 23 313 335 313 335 0.99

4 13 2e-05 0.0012 20.3 0.2 2 23 343 364 342 364 0.97

5 13 1.2e-05 0.00072 21.0 1.2 1 23 370 392 370 392 0.98

6 13 0.00044 0.026 16.1 0.7 1 23 399 421 399 421 0.97

7 13 4.1e-05 0.0025 19.3 1.4 1 23 427 449 427 449 0.96

8 13 1.9e-05 0.0011 20.4 0.6 1 23 455 477 455 477 0.98

9 13 7.9e-07 4.7e-05 24.7 0.8 1 23 483 506 483 506 0.96

10 13 3.5e-05 0.0021 19.6 0.4 1 23 512 535 512 535 0.96

11 13 1.2e-05 0.00073 21.0 2.6 1 23 541 563 541 563 0.99

12 13 0.00028 0.017 16.7 0.4 1 23 569 591 569 591 0.94

13 13 0.0018 0.11 14.1 0.1 1 23 597 621 597 621 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	4.5	2.7e+02	3.5	0.1	2	16	58	72	57	74	0.76
2	13	0.00056	0.034	15.8	0.1	1	23	283	305	283	305	0.95
3	13	3.6e-05	0.0022	19.5	1.5	1	23	313	335	313	335	0.99
4	13	2e-05	0.0012	20.3	0.2	2	23	343	364	342	364	0.97
5	13	1.2e-05	0.00072	21.0	1.2	1	23	370	392	370	392	0.98
6	13	0.00044	0.026	16.1	0.7	1	23	399	421	399	421	0.97
7	13	4.1e-05	0.0025	19.3	1.4	1	23	427	449	427	449	0.96
8	13	1.9e-05	0.0011	20.4	0.6	1	23	455	477	455	477	0.98
9	13	7.9e-07	4.7e-05	24.7	0.8	1	23	483	506	483	506	0.96
10	13	3.5e-05	0.0021	19.6	0.4	1	23	512	535	512	535	0.96
11	13	1.2e-05	0.00073	21.0	2.6	1	23	541	563	541	563	0.99
12	13	0.00028	0.017	16.7	0.4	1	23	569	591	569	591	0.94
13	13	0.0018	0.11	14.1	0.1	1	23	597	621	597	621	0.94

Sequence Information

Coding Sequence: ATGTCTGCGACCAATATCCTGTGTCTAATTTGCAATGGAAGCTGCGTCTCCAGTCGGAACTCGATCCCAATATTCAACAAAGAGACAAAAACCAGCCTTGACACCCCTCTGATGGACACGGTGACCAAAGTACTCAAAGACCTGACTGAAGAATCGGCGCATTCCCAGGTGATGTGCAAGAAATGCTTCAAAATGTTTGATGAAATCGACGAACTGGAAAACAGATTGGCGGAAATCAAAGGTGAAGTCGTCAATAGCTACACAAACACGACGACAAGGCACAAAAACGGGGACGTTCAAATCGACGAGAGTGAGACTATGGAGAATGGGATCAAAAGTGCTGAAGCGAACAAAGAAAATGAGTTGCCCAGGAAGATATTGGATATACCGTCTTCAGATGATGATACTACACAAGTGGTGATGGAAAAGAGTCAGTTACAGACTATTGAAGACATTGAGATGGAGTTGGTGAAAATGCATGGTGGTATTGAGAACATAGAAACTGTGAAAGAGCTGACTGGGGATATTATAGATTCGGGGGCTGTTGATCATTCATCAGATTCAGATTATGAGCCACCTGTCAGTGTTGAGAACTCCATCAGCAACATCAAAGTGAAAACGGAGCCGCCCCTCGACGGAGGCGGCAGTGACCGCCCTAACATCCTCCGCAAGAAGCCTTCGACCGTCGAATCTTTGAAAGTCAAGGAAGAGCCCGTCCATATGCAGCCGATGGTGGCTCGCCAGGACTCCCTCTTCACCTGCCTGGTCTGCCAAGGCGAAGAAACCGTCGCCGGAGACGTGCGCGCCATCACCGCCCACATGAAGTCCTGCCACGACATCCGACTGTACATTTGCGACGTCTGCGGCCAGGACTTCCGCAAGCGCAACGAGCTCTCTGCCCACCTCGACGAGCACGTCGCTGCAGAAGAGGGCGACTTCCAGTGCGAGGTATGCAACAGGATCTTCAGCAACCTACGTCTCTTCCGgattcacaggcggatgcattaccctcagaacaaggcgtggccgtgcgagacctgcggcaagaagtacagcagtaggaatttgctggaggaacacatcaacacgcacacgggggtgcggccgtacgtgtgccagcagtgcgggaaggacttcgcgtccaagtacacgttcagggctcacgagaagacgcacgaggtgaggccgcggccgttcgcttgccagcaatgtcccaagacgttcttgagtcagcagaacctggtgcagcacgagaggacgcactcgggaatcaaagaatACAGCTGCCATTTGTGTGGGAAGCGattcggctctgcccacaacctggaggtccactccatcgtgcacaccggctaccggcctttcgtgtgcgagatctgccacaaggcgttcgcccgcaaggccgagatccgcgatcacgagcgcactcacaccggcgagcggccctaccagtgcgagatgtgcggggcgacgttctcgcagcgctctaacttgcagtcccacaagcgcgccacccacctcgacgacaagcgatacgtatgcatggattgcggcaagggcttcaaacggcggcgcctccttgactatcacatgaaggcggcgcacaccggcgaacgcccgttcaagtgcaacgtctgcgacgccaccttcgtgtaccccgagcacttcaagaaacaccggcggatccacaccggcgaaaagccgttcctgtgcgaagtgtgcggtaaagcgttcaacagcagggacaaccgcaatgcgcacaggttcgtgcactccgacaagaaaccttacgagtgtttggtgtgcggcgctggtttcatgcggaagccgctgctataccagcacatgcagacgcagggccacttgaacgacacgatcgtggtgaatcagccgcggTTGACGACGGACGACGACCAGCTAGTGACTGTGAACTCGAGGGGCGAGATGGAGATCGTGGATCCGATGTCGCTGGCAGAGGCGGTGGAGGGGGATTCGGGTGTACCGGAGGACTCAAAGCTGTACATCTCAGAGCACATTTTACAGTCGCCAGCAGAGCAAGAGAGCGGAGAGGCGGAGGGGCTGGAGACGGTGGAGCACATCATCATAGATGGACAACACATCCGGTTCGAGAACGAGGACGAAGAGATGGACACGATCACAGGCGAAACGCTGGCGGAAAGTGAGACGCAGATCATAGAGACTCCAGACGGGCCGGTGCAGCTGGTGCGGGTGAGGATACCGAACGAAAACGGGGAGGAGGAGGAAGCGTGGATCAAAATTGTGCCAGAGTAG
Protein Sequence: MSATNILCLICNGSCVSSRNSIPIFNKETKTSLDTPLMDTVTKVLKDLTEESAHSQVMCKKCFKMFDEIDELENRLAEIKGEVVNSYTNTTTRHKNGDVQIDESETMENGIKSAEANKENELPRKILDIPSSDDDTTQVVMEKSQLQTIEDIEMELVKMHGGIENIETVKELTGDIIDSGAVDHSSDSDYEPPVSVENSISNIKVKTEPPLDGGGSDRPNILRKKPSTVESLKVKEEPVHMQPMVARQDSLFTCLVCQGEETVAGDVRAITAHMKSCHDIRLYICDVCGQDFRKRNELSAHLDEHVAAEEGDFQCEVCNRIFSNLRLFRIHRRMHYPQNKAWPCETCGKKYSSRNLLEEHINTHTGVRPYVCQQCGKDFASKYTFRAHEKTHEVRPRPFACQQCPKTFLSQQNLVQHERTHSGIKEYSCHLCGKRFGSAHNLEVHSIVHTGYRPFVCEICHKAFARKAEIRDHERTHTGERPYQCEMCGATFSQRSNLQSHKRATHLDDKRYVCMDCGKGFKRRRLLDYHMKAAHTGERPFKCNVCDATFVYPEHFKKHRRIHTGEKPFLCEVCGKAFNSRDNRNAHRFVHSDKKPYECLVCGAGFMRKPLLYQHMQTQGHLNDTIVVNQPRLTTDDDQLVTVNSRGEMEIVDPMSLAEAVEGDSGVPEDSKLYISEHILQSPAEQESGEAEGLETVEHIIIDGQHIRFENEDEEMDTITGETLAESETQIIETPDGPVQLVRVRIPNENGEEEEAWIKIVPE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01410179;
90% Identity: iTF_00415318; iTF_00753202;
80% Identity: -