Basic Information

Insect: Gnatocerus cornutus
Gene Symbol: SCRT1
Assembly: GCA_029298725.1
Location: CM055510.1:9402678-9405420[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.00024 0.019 15.8 0.1 1 23 287 309 287 309 0.95

2 12 1.5e-05 0.0012 19.5 1.5 1 23 317 339 317 339 0.99

3 12 8.5e-06 0.00067 20.3 0.2 2 23 347 368 346 368 0.97

4 12 5.1e-06 0.0004 21.0 1.2 1 23 374 396 374 396 0.98

5 12 0.0001 0.0081 16.9 0.9 1 23 403 425 403 425 0.98

6 12 2.5e-05 0.002 18.8 1.6 1 23 431 453 431 453 0.96

7 12 7.3e-06 0.00058 20.5 1.1 1 23 459 481 459 481 0.98

8 12 3.3e-07 2.6e-05 24.7 0.8 1 23 487 510 487 510 0.96

9 12 0.0001 0.0082 16.9 0.3 1 23 516 539 516 539 0.94

10 12 5.1e-06 0.00041 21.0 2.6 1 23 545 567 545 567 0.99

11 12 0.00012 0.0094 16.7 0.4 1 23 573 595 573 595 0.94

12 12 0.0032 0.25 12.2 0.1 1 21 601 621 601 625 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.00024	0.019	15.8	0.1	1	23	287	309	287	309	0.95
2	12	1.5e-05	0.0012	19.5	1.5	1	23	317	339	317	339	0.99
3	12	8.5e-06	0.00067	20.3	0.2	2	23	347	368	346	368	0.97
4	12	5.1e-06	0.0004	21.0	1.2	1	23	374	396	374	396	0.98
5	12	0.0001	0.0081	16.9	0.9	1	23	403	425	403	425	0.98
6	12	2.5e-05	0.002	18.8	1.6	1	23	431	453	431	453	0.96
7	12	7.3e-06	0.00058	20.5	1.1	1	23	459	481	459	481	0.98
8	12	3.3e-07	2.6e-05	24.7	0.8	1	23	487	510	487	510	0.96
9	12	0.0001	0.0082	16.9	0.3	1	23	516	539	516	539	0.94
10	12	5.1e-06	0.00041	21.0	2.6	1	23	545	567	545	567	0.99
11	12	0.00012	0.0094	16.7	0.4	1	23	573	595	573	595	0.94
12	12	0.0032	0.25	12.2	0.1	1	21	601	621	601	625	0.92

Sequence Information

Coding Sequence: ATGTCAACGACCAACATTCTGTGTCTGATATGCAATGGCAGTTGCGTGTCCAGCAGAAATTCAGTGCAAATTTTCGGCAAAGAGGCAAAAACGAATACAGACACACCTCTAGCTGATATTCTAACCAAAGTTTTAACCAAGGACCTCACCGAAGAGACTGCACATTCACAGGTTATGTGCAAAAAGTGTTTTAAACTGTTTGACGAAATGGATGAATTGGAGCATCGGTTGAGTGAAGTGAAAACAGAGATAATTAATAACTATACAAACACCACAACTAGACTTAAAAACGGTGAAAATCAAAATGATGAAAGTGATACAATGGAAAACGGCATCAAAGGTACTGATGCCAACAAGGAGAACGAATTACCGCGGAAGATATTAGATATTCCTTCTTCAGATGATGATACAACTCAGGTAGAGAAAAATCAGTTACAAACCATTGAAGACATTGAGATGGAGCTAGTTAAAATGCATGGAGGCATTGAAAATGTTGAAGGGGTCAAAGAGCTAACTGGTGATATCATAGATTCAGGAGCTGTTGATCATTCATCTGATTCAGACTATGAGCCTCCAGTCAATGTAGAGATTTCCATTAACAGTAAAAGTAATCCAGaagtaaaaataaaaaccgAGCCGCCTCTGGACGGTGGCGGCAGCGAGCGTCCCAACATCCTCCGCAAAAAGCCTTCCTCTATTGAAGCTATCAAAATTAAAGAGGAACCTCTCCATCTCCAGCCCATGGTGGCTCGCCAAGACTCGCTCTTCACTTGTTTAATGTGTCAAGGCGATGAAACTGTTGCTGGCGACGTCCGCGCGATCACCGCCCACATGAAGTCGGCTCACGACATCCGTCTGTATATCTGCGATGTCTGCGGTCAAGACTTCCGAAAACGCAATGAATTGTCTGCTCATTTAGATGAGCACGTTGCAGCCGAGGAAGGCGATTTTCAATGTGAAGTTTGCAACCGCATTTTCAGTAACTTGCGACTATTTAGGATTCATAGGCGGATGCACTATCCGCAGAACAAAGCGTGGCCATGTGATACGTGTGGAAAGAAGTATAGCAGTAGAAACCTGTTGGAGGAGCATATAAATACACATACAGGAATCAGGCCGTATGTTTGTCAGCAATGCGGGAAGGATTTTGCGTCGAAGTATACATTTAGAGCACACGAAAAAACTCACGAAGTGCGGCCGAGGCCCTATGCGTGTACACAATGTCCTAAGACATTTTTGAGCCAACAGAACTTATTGCAGCATGAAAGGACGCACTCAGGGATTAAGGAATTTAGCTGTCATTTGTGTGGAAAGAGGTTTGGTTCTGCACACAACTTGGAGGTCCATTCGATAGTCCACACAGGTTATCGTCCCTTTGTCTGCAAGATTTGCCACAAGGCCTTTGCCAGAAAGGCGGAAATTCGCGACCATGAACGCACCCACACAGGCGAACGCCCTTATCAATGTGAAATGTGTGGTGCCACTTTCTCCCAAAGATCCAACTTACAATCGCACAAAAGAGCCACTCATTTGGATGACAAACGCTATGTTTGCATGGATTGTGGTAAAGGGTTCAAAAGACGCCGCTTGTTGGATTATCACGTGAAGGCAGCTCACACAGGTGAGCGTCCCTTCAAGTGTAATGTGTGCGACGCTACTTTCGTATATCCAGAGCACTTCAAGAAGCATCGTCGGATCCACACCGGCGAAAAACCATTCTTATGTGAGGTGTGTGGTAAAGCTTTTAACAGTAGAGACAATAGAAATGCGCATAGATTCGTACACTCGGATAAAAAACCTTACGAGTGTCTTGTTTGCGGTGCCGGCTTTATGAGGAAAcctcttttataccaacacatgCAAGCCCAAGGACATTTGAACGATACTATCGTCGTGAACCAACCTCGATTGACTACTGATGACGACCAGCTGGTGACGGTTAACTCCCGCGGAGAAATGGAGATTGTGGATCCAATGTCGTTAGCCGAAGCTGTGGAAGGCGACTCTGCAGTTCCTGAAGACTCAAAATTATACATTTCCGAGCACATTTTGCAGTCACCGCCTGAAGAAGAAGGAGGAGAGAATGAAGGATTAGAGACTGTAGAACACATCATCATCGATGGGCAACACATACGGTTCGAAAACGAAGACGACGAAATGGACACCATCACGGGGGAAACATTAGCCGAGAGTGAAACTCAAATTATTGAAACACCTGACGGACCAGTACAGCTGGTGAGAGTGCGGATACCAAACGAGCACGGGGAAGAAGAAGAAGCTTGGATAAAAATTGTGCCAGAATAA
Protein Sequence: MSTTNILCLICNGSCVSSRNSVQIFGKEAKTNTDTPLADILTKVLTKDLTEETAHSQVMCKKCFKLFDEMDELEHRLSEVKTEIINNYTNTTTRLKNGENQNDESDTMENGIKGTDANKENELPRKILDIPSSDDDTTQVEKNQLQTIEDIEMELVKMHGGIENVEGVKELTGDIIDSGAVDHSSDSDYEPPVNVEISINSKSNPEVKIKTEPPLDGGGSERPNILRKKPSSIEAIKIKEEPLHLQPMVARQDSLFTCLMCQGDETVAGDVRAITAHMKSAHDIRLYICDVCGQDFRKRNELSAHLDEHVAAEEGDFQCEVCNRIFSNLRLFRIHRRMHYPQNKAWPCDTCGKKYSSRNLLEEHINTHTGIRPYVCQQCGKDFASKYTFRAHEKTHEVRPRPYACTQCPKTFLSQQNLLQHERTHSGIKEFSCHLCGKRFGSAHNLEVHSIVHTGYRPFVCKICHKAFARKAEIRDHERTHTGERPYQCEMCGATFSQRSNLQSHKRATHLDDKRYVCMDCGKGFKRRRLLDYHVKAAHTGERPFKCNVCDATFVYPEHFKKHRRIHTGEKPFLCEVCGKAFNSRDNRNAHRFVHSDKKPYECLVCGAGFMRKPLLYQHMQAQGHLNDTIVVNQPRLTTDDDQLVTVNSRGEMEIVDPMSLAEAVEGDSAVPEDSKLYISEHILQSPPEEEGGENEGLETVEHIIIDGQHIRFENEDDEMDTITGETLAESETQIIETPDGPVQLVRVRIPNEHGEEEEAWIKIVPE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01410179;
90% Identity: iTF_01568257;
80% Identity: -