Znev002124.1
Basic Information
- Insect
- Zootermopsis nevadensis
- Gene Symbol
- -
- Assembly
- GCA_000696155.1
- Location
- NW:16733-18314[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.032 52 3.4 0.2 20 52 145 177 135 179 0.79 2 9 0.0098 16 5.1 0.1 21 48 174 201 169 207 0.85 3 9 0.013 21 4.7 0.1 21 44 230 253 222 263 0.85 4 9 0.11 1.9e+02 1.7 0.0 21 44 258 281 251 285 0.85 5 9 0.14 2.2e+02 1.4 0.1 21 43 286 308 282 313 0.86 6 9 0.0018 2.9 7.4 0.4 21 46 314 339 305 346 0.89 7 9 0.016 26 4.4 0.1 23 49 372 398 361 402 0.83 8 9 0.12 1.9e+02 1.6 0.0 21 43 398 420 396 424 0.88 9 9 0.00035 0.57 9.7 0.0 21 46 426 451 418 454 0.87
Sequence Information
- Coding Sequence
- atggatgaaataaaatataaaccaagtTCAAACAACGAGACTACCAGTACACCTTCAGACTTCGAAGACGGAGAACATCATTTACCTGTAACAACACTTTTTATAAAAAGTGAAACTAAAGATGAATCATGGGATAATGTAATAAACAATGAACGCTTAAAGGAAGAGGTTACCATAGAGAAACATGAGTTGCACGTGGACAATGGGGATGAATTAAAACCTAGAAAAGAGAAATGTGAGAATGTGGAAATGTCAAACCAATATGACATGTGTATAATCTTTCAACAACAATATAATACGGAGACTGGACGCAACTGTACAAATTTAAACCAGAAATCAGAAGAATTGTCAAAAGAGAAACGTTATAAATGCGAATTGTGTAATAAATCGTTCTCACAAAGTGGTGCTTTAACGACCCATAGACGTACTCATACAGGAGAAAGACCATACTCATGTGACATATGTAATAGAAAATTCACGCAAAAAGTAACGCTAGAAAATCATTGTCGTGTCCATACTGGAGAGAAGCCCTTCGTTTGTAATatctgtaacaataaattttcaaaaaagacGAACCTTAAGTACCATTATCGCATCCACTCTGGTCTGAAACCTTATCAATGTGATGTTTGCAATAAGACATTCTCATTACGCGATCGCCTCAAAGAACACTACCGCATTCATACAGGAGAAAAACCATATGTTTgtgacatttgtaataaaagatTTTCACAGTGTGGAAATTTAGCAACTCACAAGCGCACGCACACTGGAGAGAAACCATATATTTGTGATGTATGCAATATGAAATTCGCAGAAAGCGCGACCCTGAAGACGCACTATCGTATCCACACAGGCGAGCGGCCATACGCGTGCAATGTTTGCAATAAAACATTCTCCAAGAAAGGAAATTTGACGAATCACCATCGTGTTCACACGGGAGAGAAGCCATATTGTTGTGTTGTATGTAATAAAAGGTTCTCTGAAagtgcaaatttaaaaaatcatctTCGTATTCACACAGAAGAGAAGAGATACAGTTGTTATATATGCAATAACAAGTATTCTGATAAATCACAACTAAAAACTCACTATCGTTGTCATACAGACGCAAAGCCATATATGTGTGTggtatgtaataaaaaattttctgaaagtgtAAATCTGAAAAAACATTATCGTATACACACAGGAGAGAAGCCATACAAATGTGAAGTTTGTAATAAACAGTTCACGCAGAGTGGTCACCTTGAAACACACAAACGCACGCACACTGGGGAAAAGCCATTCACTTGTAACATCTGTAATAAGAAATTCTCACAAAAAGTAACTTTAAAGAGACATGGTCGTCTTCACGCAGAAGACACACAAAATTCGAAGACTCGGACACTTAGCTCTGAGAATACTGGAGATCGATTGCATCCAGCatgttctgaattattaatggaaaatcagcagtaa
- Protein Sequence
- MDEIKYKPSSNNETTSTPSDFEDGEHHLPVTTLFIKSETKDESWDNVINNERLKEEVTIEKHELHVDNGDELKPRKEKCENVEMSNQYDMCIIFQQQYNTETGRNCTNLNQKSEELSKEKRYKCELCNKSFSQSGALTTHRRTHTGERPYSCDICNRKFTQKVTLENHCRVHTGEKPFVCNICNNKFSKKTNLKYHYRIHSGLKPYQCDVCNKTFSLRDRLKEHYRIHTGEKPYVCDICNKRFSQCGNLATHKRTHTGEKPYICDVCNMKFAESATLKTHYRIHTGERPYACNVCNKTFSKKGNLTNHHRVHTGEKPYCCVVCNKRFSESANLKNHLRIHTEEKRYSCYICNNKYSDKSQLKTHYRCHTDAKPYMCVVCNKKFSESVNLKKHYRIHTGEKPYKCEVCNKQFTQSGHLETHKRTHTGEKPFTCNICNKKFSQKVTLKRHGRLHAEDTQNSKTRTLSSENTGDRLHPACSELLMENQQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01567179;
- 90% Identity
- iTF_01567179;
- 80% Identity
- iTF_01567179;