Znev006377.1
Basic Information
- Insect
- Zootermopsis nevadensis
- Gene Symbol
- -
- Assembly
- GCA_000696155.1
- Location
- NW:454321-459361[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 8 0.0031 5.1 6.7 0.7 22 51 118 147 107 149 0.74 2 8 0.12 2e+02 1.6 0.0 21 43 145 167 142 174 0.82 3 8 0.14 2.3e+02 1.4 0.0 21 44 173 196 167 206 0.82 4 8 0.63 1e+03 -0.7 0.0 21 44 201 224 196 228 0.86 5 8 0.0088 14 5.2 0.2 21 44 229 252 226 262 0.91 6 8 6.6e-05 0.11 12.0 0.0 14 43 277 307 267 313 0.86 7 8 0.0017 2.7 7.5 0.2 21 52 313 343 310 345 0.89 8 8 0.49 8e+02 -0.3 0.0 20 30 339 349 336 362 0.77
Sequence Information
- Coding Sequence
- ATGTTGCAGCATCGCATTTGCAGTGAAATATCAAGAATGAACACAATGACTTACAGCATACTGACACATTATTGTGACAAGATGAAACTTGAGTACATCATGAATGAAGAACTTATAATCAAGAAGGAGGTAGACACATCTGATATTGAGATTAATGCAGATGATATTAAGCAGGAAGTTCCAGTTCCATTTGTGTTTGTTGCAGTTAAAACTGAAGTCCAGGATGAGGCAGAATGCTCTTTTGTTGATGATGGTGTGGAAACATTTGAAGAAGATATAAAGAATGAAGTAGATGTGTTGGTACCAGAAGTGTGTCTTCAGGAGGTACctagaaacaaaattgttactaCAAGTAAATGCCCTACATGTCATGTTTGTGGCAAGGTGTTCAGATGTGTTGCTGAAGTGAAGAGACATATACCGATACATACGGGAGAAAAGCCGCACAAATGCGAAATATGCGGTAAAGGATACAATGATACAGGCAACTTAAATACACATAAATTGAAACATACGGGAGAGAGGCCTTATTTATGTTCTGTATGTGGTAAGGGTTTCTGTACGTCTGGGAATTTAAATGCGCATACTATGACTCATACGGGCGAGAAGCCTTATGTGTGTTCAGAATGTGGCAAGGGATTTAGTAATTCAGGTAATCTAAGTTATCACATACTTACTCATACGGGAGAAAGACCACATGTTTGTGAAGTTTGTGGGAAACTTTTTAGGAGACCTTCTCATTTGAAACAACATTTGGTCACTCATACTGGTGAGAAagcatttatttgtaaaatttgtaacaaaggCTTTAAACAGTTTCCTGCTATGAAAATGCATTCACGTACTCACAGTGGAGAAAAGCCTCATGTGTGTAAAATATGTGGTAAAGGATTTGTACAGTCTACCAATTTAAAAACGCATACTCTGACTCACAGTGGAGAGAAGCCTTATGAATGTAATGTCTGCCGTAAGAGATTCATTCAGGCCAGTAATTTGAAAAAACATTCATTGACTCATACAGAGAAACCATATGCATGTACAGTTTGTGGTAAagggttttcttcagtttcatacTTGAAAAAACATAGTGACACTCATACTGAATAA
- Protein Sequence
- MLQHRICSEISRMNTMTYSILTHYCDKMKLEYIMNEELIIKKEVDTSDIEINADDIKQEVPVPFVFVAVKTEVQDEAECSFVDDGVETFEEDIKNEVDVLVPEVCLQEVPRNKIVTTSKCPTCHVCGKVFRCVAEVKRHIPIHTGEKPHKCEICGKGYNDTGNLNTHKLKHTGERPYLCSVCGKGFCTSGNLNAHTMTHTGEKPYVCSECGKGFSNSGNLSYHILTHTGERPHVCEVCGKLFRRPSHLKQHLVTHTGEKAFICKICNKGFKQFPAMKMHSRTHSGEKPHVCKICGKGFVQSTNLKTHTLTHSGEKPYECNVCRKRFIQASNLKKHSLTHTEKPYACTVCGKGFSSVSYLKKHSDTHTE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01567229;
- 90% Identity
- iTF_01567229;
- 80% Identity
- iTF_01567229;