Znev008823.1
Basic Information
- Insect
- Zootermopsis nevadensis
- Gene Symbol
- -
- Assembly
- GCA_000696155.1
- Location
- NW:739953-745681[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.033 53 3.4 0.0 19 46 78 105 74 113 0.84 2 9 0.46 7.5e+02 -0.3 0.0 21 43 108 130 106 135 0.85 3 9 0.0021 3.5 7.2 0.0 21 45 136 160 126 167 0.82 4 9 0.027 45 3.7 0.0 21 48 164 191 161 197 0.85 5 9 0.35 5.8e+02 0.1 0.0 22 43 193 214 190 223 0.84 6 9 0.39 6.4e+02 -0.0 0.0 21 44 220 243 207 253 0.78 7 9 0.74 1.2e+03 -0.9 0.1 22 32 249 259 235 272 0.69 8 9 0.012 20 4.8 0.0 16 43 271 298 266 303 0.89 9 9 0.0052 8.6 6.0 0.0 22 48 306 332 299 338 0.85
Sequence Information
- Coding Sequence
- atgttatttcgtCAATCATCACGTGACGGCCTCACGAATGAAGCTCTGAATAGAGAAAATGAATATTCTTCATCTGCTGATTGGGAGCATTTCCTTTGTCAGTCATCAATGAAAGAAGGTAAGGATGAACATGGTGATTGCATTGATGAACAGAGTCTGAGGATTGATGAAAATCATGAACACACGAACATACTTACTAGTAAGGATTGTGACAGGTTATGCTCACTTGGAAGTAATGCAGACAGACCATATGTGTGTGCTGTGTGTGGGAAAGGATTCAGTCATGCTGGCAACCTGAGGGTTCATAACATGATACACACTGGAGAGAAACCCCACCTGTGTCAACTATGTGGGAAAAGATTTGTTACAAGTAGTGAACTCAAGAAACATAGCTTATCTCATACAGGAGAGAAGCCACACGTGTGCATAATGTGTGGCAAGGGATACATCCAGCGTGGAGATTTACGAAGACACCTATTGACTCACACGGGTGAAAAACCTTTCTCTTGCTCATACTGTGGTAAGGGTTTTACagataattcaaatttaaagcAACATTTGCTTATACATACAGGGGAGAAGCCATACAAATGTGAGGAATGTGGAAAGGGTTTTAACAATTCTGGAAATCTTAAAACTCACAACTTGACACATACTGGCGAAAAACCTCACAAATGTAAAACATGTGGCATTGGCTTTAGTACTCGTGGCAATCTTAAAACTCATATATTAACACATTCTGAAAAGAAACCATTTGTTTGTGGCATCTGTGGTGAAGGTTTTTGTAGAAATTCTCAATTAAAAACACATACATCAAGACATAGTGGTGAGAGACCTTTTGCCTGTGATGTCTGTGGTAAGCAATTTTTTACAAAGGGAAATTTGAGAACACATTCTATAACTCATACTGGTCAGCACCACCCATTTACATGTTCTGTTTGTAATAAAGGTTTTACTTATAGAGGAAACTTGAAGCAGCATATTGAGACACACACTGTAGAAAAACAGCAAGTCTGTAAAGAATGTGGTAAAAGTTTTAGTAGTAGTACATGGTTTAAGAAACATACACTATCCCACTCTTTAAAAGGTAGCATTGTCAGCAGTTCATGA
- Protein Sequence
- MLFRQSSRDGLTNEALNRENEYSSSADWEHFLCQSSMKEGKDEHGDCIDEQSLRIDENHEHTNILTSKDCDRLCSLGSNADRPYVCAVCGKGFSHAGNLRVHNMIHTGEKPHLCQLCGKRFVTSSELKKHSLSHTGEKPHVCIMCGKGYIQRGDLRRHLLTHTGEKPFSCSYCGKGFTDNSNLKQHLLIHTGEKPYKCEECGKGFNNSGNLKTHNLTHTGEKPHKCKTCGIGFSTRGNLKTHILTHSEKKPFVCGICGEGFCRNSQLKTHTSRHSGERPFACDVCGKQFFTKGNLRTHSITHTGQHHPFTCSVCNKGFTYRGNLKQHIETHTVEKQQVCKECGKSFSSSTWFKKHTLSHSLKGSIVSSS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01567184;
- 90% Identity
- iTF_01567184;
- 80% Identity
- iTF_01567184;