Basic Information

Insect: Zootermopsis nevadensis
Gene Symbol: -
Assembly: GCA_000696155.1
Location: NW:303523-319269[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 0.00089 0.032 14.1 0.2 2 23 422 444 421 444 0.96

2 16 1e-05 0.00038 20.2 0.8 1 23 449 471 449 471 0.98

3 16 0.00012 0.0043 16.8 2.5 1 23 484 507 484 507 0.93

4 16 0.0023 0.082 12.8 0.3 1 23 513 535 513 535 0.98

5 16 3.9e-06 0.00014 21.5 3.3 1 23 541 563 541 563 0.96

6 16 4.7e-06 0.00017 21.2 1.0 2 23 573 594 572 594 0.97

7 16 0.0013 0.048 13.5 3.7 1 23 600 622 600 622 0.93

8 16 1.1e-05 0.00039 20.1 3.5 1 23 628 650 628 650 0.99

9 16 0.0039 0.14 12.1 0.2 1 23 656 678 656 678 0.98

10 16 3.7e-05 0.0013 18.4 0.3 1 23 702 724 702 724 0.99

11 16 1e-05 0.00037 20.2 0.6 1 23 730 753 730 753 0.98

12 16 0.15 5.3 7.1 0.5 1 23 759 781 759 781 0.93

13 16 0.00073 0.026 14.4 0.8 1 23 787 809 787 809 0.98

14 16 7.6e-06 0.00027 20.6 1.9 1 23 815 837 815 837 0.97

15 16 2.9e-06 0.0001 21.9 1.7 1 23 843 865 843 865 0.98

16 16 4e-06 0.00014 21.5 0.8 2 23 872 893 871 893 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	0.00089	0.032	14.1	0.2	2	23	422	444	421	444	0.96
2	16	1e-05	0.00038	20.2	0.8	1	23	449	471	449	471	0.98
3	16	0.00012	0.0043	16.8	2.5	1	23	484	507	484	507	0.93
4	16	0.0023	0.082	12.8	0.3	1	23	513	535	513	535	0.98
5	16	3.9e-06	0.00014	21.5	3.3	1	23	541	563	541	563	0.96
6	16	4.7e-06	0.00017	21.2	1.0	2	23	573	594	572	594	0.97
7	16	0.0013	0.048	13.5	3.7	1	23	600	622	600	622	0.93
8	16	1.1e-05	0.00039	20.1	3.5	1	23	628	650	628	650	0.99
9	16	0.0039	0.14	12.1	0.2	1	23	656	678	656	678	0.98
10	16	3.7e-05	0.0013	18.4	0.3	1	23	702	724	702	724	0.99
11	16	1e-05	0.00037	20.2	0.6	1	23	730	753	730	753	0.98
12	16	0.15	5.3	7.1	0.5	1	23	759	781	759	781	0.93
13	16	0.00073	0.026	14.4	0.8	1	23	787	809	787	809	0.98
14	16	7.6e-06	0.00027	20.6	1.9	1	23	815	837	815	837	0.97
15	16	2.9e-06	0.0001	21.9	1.7	1	23	843	865	843	865	0.98
16	16	4e-06	0.00014	21.5	0.8	2	23	872	893	871	893	0.95

Sequence Information

Coding Sequence: ATGTCCAAATTGGCATTTCAAATAGCAAACCAAggagATGATGTTGGATTAGCAGCacctataattaattttgaagcaatGGAACAGAGTGCAGTATGTATTGTGTCAGACTCACCTGATGTgaaagaagaggaagaagtaaaGGACAACGTTAGTTCAATTATTGGAAGTACCTTAGAGTCGGTGAAGGATGGTGTCTATATCAGATCCGAGATGGTGGTAGGAAAAGAAGAAGACAGAATAGAAATGGGGCAAGCAGTTGTAAGCTGCTTGGAGACTGTTGGTGCTGGAGGTGAAGGGGCTAGTCCAATTTTGGATTCATTGGGCATTGTGATAGAGGAAGTGCACATAATGGAAGAGGTAAAATGGCATCAGGAAGAGGTGccattacaaaatcaacaaGAGCATATTCTTTTCAATCAGTTGTGTCGTGTATGTGCTttggaaacagaaaatgtagtGTCTGTGTTCGGAGAAGAAGGAACAGAATTGCAATTGGTTGAGAAGATACACTGGCATTTACCTATTGAAGTAAAGGAAGATGATAAATTGCCTGTGACGGTGTGTTCCTCCTGCATATCCACATTGAATTCCTTTCATGAACTTGCAACAACGTGCTTCAAAGCAAATGAAAAGCTGCAAAAACTCTTCAATATAGATGAATCAGATATGAATGACTGTGgtgaaaatagtaattttgCTGCAACACATTTGCAACTCGATAAACCATTGGATTCCTGTGATAGAACAGTTCTCTTCAGAGAAAGCATACACAAGGCACCCAATATAACTGGAATGCAGAGATCTTCAAAGCGACCTAAACTGCCAAGCCATCAGTTATCAAAAGCTATTGAACTGTTGAAGAAAGCAAAGGAAGGACATGGGAAGAGTATGAGAAGTACACAAAAGACCTTGAATAAtggccataaatcaaatatattatctAACAATGATGCTGCTGAAATGGACCAGTCTGGAGATGATCATTATGCTGATAATGAAGATGTAAAGATTAACAGTATTCCCTCTGATGACTTaacacaaaacactgaagaACCTCATCACAGTGGCCCATCACCAATTTGTATTGAGAAAAGTGAATATTGTAGGCCACAACGAAAACTTAAGAAGAAGACATCTAAAGATTGTGACATTTTCCTTAAATCTAAGATGGTTGGAGTAATGCAACATATAATGAGAAAGGaagatgagaatgaagatgagattaaggaaaggaaaagaaatgtaaatcgTAAAGAATGGAGATGTGAAACTTGTGGATATGTGTTACCAAGAAAAACTGCATTAATCATGCATCAGCAGCGAAAACATGCCCCACAGAATTTTTCTTGCAGCTACTGTGACAAAACTTTCCGCAATGCAATAGCAATGAAAGTACATGAACGGAGTCACACAAAGGTTGCTGCTGAAAAAACTGAGCCAACTTCTTACATGTGCGAGTTCTGTGGCAAATCATTCCGGGGAAAGAAGACATTGAAGGAACATCATCTAGCAAATCACAGTGATGAAAAGCCttataaatgtgataaatgtGATAGAAACTATGGTTCCCTAGCCAGTCTTGACATTCATAAGGCCACCCATTCTACTGAAACCCCCTATCTTTGTGATCTGTGTGGTAAGAGCTTTAAGCATGTGAGCAATCTCCGCAGCCACAAGCGTTCACATATGGATGATTCGGACAAGAATCGTCAGGTATGTGATGTCTGTGGTAAGGGATTTCGGTCCAGGTTTCACTTATCAGAACATATGAATGTACATACTGGAAGACGTCCATATTCATGTAATGTGTGTGGCAAGCATTTCCACAAAAAGATCCAGCTTCGGCAACATGGTTCAGCACATTCGGGAATGCAGCCCTTCAAATGTCATCTGTGTGGTGTTCGATTTAATCGTAGGGGAAACATGACGCAGCACATAAAGCGTCATGACAGAGAACGCAAGTACACTTGCAGAGTATGTAATGAAGGTTTTGCTACGCTGGGAGCTGTTCTGAGTCATCGCAAAAAGCATACAAAAGAAGAGGTTGAAAACAGCATACGACAGCAGACGGGAACAGTAGATGACCCAGAGCAAGTGGCTTACAAATGTGAAGTATGTGGTAAGCTTCTTGCTAAAAAGGAATCTTTATCCATCCACATGCGTTCCCATACAGGTGAGAAACCATTTGAATGTGGAGTATGTGGAAAACGGCTGAGCAACAAGGGTTCTTTATCGTATCACATGCGCTCCTTCCACACAGGAGAACGGCCTCATACTTGTCAATACTGTGGAGAAGGCTTCCTGTCTCGCGAAGCCCGTCTGGTACATGAACGAATACACACAGGAGAAAAACCATATATATGTTCTGTTTGTGGTATGGGCTTCCGATGCTCCAGTAATTTGGCCCAGCACTCTCGTGTTCATTCAGAGGCTCGGCCTCATCCATGCCCACACTGTGAAAAACGTTTCCAAAGAAAGGGTGCACTTGATGTACATATCCGCACTCACACGGGTGAACGTCCCTATGCCTGTGACATGTGTGGTCGACGGTTCACTCAGAAGAATGACATGCTCAAACACCGGCGAACACATTCCCCAGACCGACCCTGCCCCTGTCCTCAATGTGGCCAGGTATTTTCACAGAAACGTGAGCTTGCTAAACATCAGTTGTTGCATATAGCAACATCTCAAACAGCAGTGCAGCATACTATTGAGAATTCACCCCCTACACAGACAGTACTCATCACAACAGCTGACAGTCTCATTACATATCCAGAAATAAATGTACCAGTAATATACAATTACTAG
Protein Sequence: MSKLAFQIANQGDDVGLAAPIINFEAMEQSAVCIVSDSPDVKEEEEVKDNVSSIIGSTLESVKDGVYIRSEMVVGKEEDRIEMGQAVVSCLETVGAGGEGASPILDSLGIVIEEVHIMEEVKWHQEEVPLQNQQEHILFNQLCRVCALETENVVSVFGEEGTELQLVEKIHWHLPIEVKEDDKLPVTVCSSCISTLNSFHELATTCFKANEKLQKLFNIDESDMNDCGENSNFAATHLQLDKPLDSCDRTVLFRESIHKAPNITGMQRSSKRPKLPSHQLSKAIELLKKAKEGHGKSMRSTQKTLNNGHKSNILSNNDAAEMDQSGDDHYADNEDVKINSIPSDDLTQNTEEPHHSGPSPICIEKSEYCRPQRKLKKKTSKDCDIFLKSKMVGVMQHIMRKEDENEDEIKERKRNVNRKEWRCETCGYVLPRKTALIMHQQRKHAPQNFSCSYCDKTFRNAIAMKVHERSHTKVAAEKTEPTSYMCEFCGKSFRGKKTLKEHHLANHSDEKPYKCDKCDRNYGSLASLDIHKATHSTETPYLCDLCGKSFKHVSNLRSHKRSHMDDSDKNRQVCDVCGKGFRSRFHLSEHMNVHTGRRPYSCNVCGKHFHKKIQLRQHGSAHSGMQPFKCHLCGVRFNRRGNMTQHIKRHDRERKYTCRVCNEGFATLGAVLSHRKKHTKEEVENSIRQQTGTVDDPEQVAYKCEVCGKLLAKKESLSIHMRSHTGEKPFECGVCGKRLSNKGSLSYHMRSFHTGERPHTCQYCGEGFLSREARLVHERIHTGEKPYICSVCGMGFRCSSNLAQHSRVHSEARPHPCPHCEKRFQRKGALDVHIRTHTGERPYACDMCGRRFTQKNDMLKHRRTHSPDRPCPCPQCGQVFSQKRELAKHQLLHIATSQTAVQHTIENSPPTQTVLITTADSLITYPEINVPVIYNY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01289135;
90% Identity: -
80% Identity: -