Zimm006299.1
Basic Information
- Insect
- Zonitis immaculata
- Gene Symbol
- Mbd2_1
- Assembly
- GCA_037414775.1
- Location
- JAZBGX010001625.1:4343-4945[-]
Transcription Factor Domain
- TF Family
- MBD
- Domain
- MBD domain
- PFAM
- PF01429
- TF Group
- Unclassified Structure
- Description
- The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 5.8e-13 1.2e-09 37.3 0.3 3 73 7 96 5 100 0.87
Sequence Information
- Coding Sequence
- atgagtataacaattgaaaaaacaaaatacgaATGTACTTCGTTACCAAAACGTTGGCAACGTGAAGATGTATTGCGTAAAACTGGTATATCCGTTGGTAAGGTCGATGTTATGTATTATAGTCGTAATGTACGTAATGATGCATCATTAGTACCACCAATAAGACAAACAGCATCAATATTCAAACAACCAGTAACAGTTTATAAGACACAAGAAAGTAAAGTTAAATCAGATTATAAAAATGGTAATCAAGAAAAACCGAAACAATTAATATGGGAGAAACGTTTAGAAGGTTTACGTGCATGTGATTTAGATGGTACCGAATTTGAAGCAATGGAATTACCGAAAGGTTTAAAACCAGTTGGTCCTAATGTTAATGAAGAAACGATAATACAAAGTGTTGCTACTGCTTTACATGTATCAACACAACCTGTCACTGGACAAACTGGATCGAAAcaatcattagaaaaaaatccggGTGTTTTTTTAGATCCCAAACAACCATTAGTACAAGCTGTTAATATATCAGATGATGATATTAAACGACAAGAAGATCGTGTCGCTATAGCTAGAAAGAAATTACAGGAAGCATTAAAATCGTAA
- Protein Sequence
- MSITIEKTKYECTSLPKRWQREDVLRKTGISVGKVDVMYYSRNVRNDASLVPPIRQTASIFKQPVTVYKTQESKVKSDYKNGNQEKPKQLIWEKRLEGLRACDLDGTEFEAMELPKGLKPVGPNVNEETIIQSVATALHVSTQPVTGQTGSKQSLEKNPGVFLDPKQPLVQAVNISDDDIKRQEDRVAIARKKLQEALKS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01351724;
- 90% Identity
- iTF_00814409; iTF_00929578; iTF_01022225; iTF_01410001; iTF_00813720; iTF_00987131; iTF_00841852; iTF_01366333; iTF_01442590; iTF_00078472; iTF_01311564; iTF_01329816; iTF_01283399;
- 80% Identity
- -