Zimm010715.1
Basic Information
- Insect
- Zonitis immaculata
- Gene Symbol
- tfip11
- Assembly
- GCA_037414775.1
- Location
- JAZBGX010005144.1:4867-5633[-]
Transcription Factor Domain
- TF Family
- GCFC
- Domain
- GCFC domain
- PFAM
- PF07842
- TF Group
- Unclassified Structure
- Description
- This entry describes a domain found in a number of GC-rich sequence DNA-binding factor proteins and homologues [4, 5], as well as in a number of other proteins including Tuftelin-interacting protein 11 [1]. While the function of the domain is unknown, some of the proteins it is found in are reported to be involved in pre-mRNA splicing [1, 2]. This domain is also found in Sip1, a septin interacting protein [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 3.7e-16 1.8e-12 47.2 4.6 229 275 1 47 1 47 0.97 2 2 0.05 2.4e+02 0.8 0.0 157 189 59 90 51 119 0.65
Sequence Information
- Coding Sequence
- ATGCAACAATTTGTTATCAATCCACACCAACAACATCTAGaaccATGGCATTGGGTAATTGATTGGAACGATATGTTATCGGTTGGGAATATGACATTGATTTTGGAGAAATTCTTTTTTCCAAAATGGTTACAAACTTTAGCGATGTGGTTAAatcacaatccaaattatacaCAAGTTACTGAATGGTATTCGGGATGGAAAAGTATGATACCGGAAGAAATTGTAATACAACCTACAATTAAAGaaaatttccataatgCATTGGAAATGATGAGTAGAGCTGTGACTTTTGGCCAACAACCCGGTGCTAAAGAatcaatttcatatttaagtagtatggaaaataatatacaacCAATACCACCGCCGCCGCCACcattacaacaaaaagaaaGTTTCGCTGATACATTAAATTCTCTATCGAAAATACCACCTTTATATAAAGATTTAGTTGCAAAACGTTGCGAAGAACGTGGCATATTATTTGTACCAATACCAAATAAATATCATGAAGCTAAACAAGTTTATCGTATCGGTACAAATGGTCTACAATGCTATATTGATAggaatgtaattttttcatcacataataattcaaattgggCACCAACTTCATTGAATCGTCTACTCGATATGgcataa
- Protein Sequence
- MQQFVINPHQQHLEPWHWVIDWNDMLSVGNMTLILEKFFFPKWLQTLAMWLNHNPNYTQVTEWYSGWKSMIPEEIVIQPTIKENFHNALEMMSRAVTFGQQPGAKESISYLSSMENNIQPIPPPPPPLQQKESFADTLNSLSKIPPLYKDLVAKRCEERGILFVPIPNKYHEAKQVYRIGTNGLQCYIDRNVIFSSHNNSNWAPTSLNRLLDMA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01022218;
- 90% Identity
- -
- 80% Identity
- -