Zimm009479.1
Basic Information
- Insect
- Zonitis immaculata
- Gene Symbol
- bab1
- Assembly
- GCA_037414775.1
- Location
- JAZBGX010003695.1:1-8685[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.9e-11 2.5e-08 33.2 0.0 1 35 13 48 13 53 0.93 2 2 3.2e-18 4.3e-15 54.9 0.0 1 43 162 205 162 207 0.95
Sequence Information
- Coding Sequence
- TATCCGAccttattaaaattaaaaacaccAACATGGACACAAGATCAATTAAAAGAAGCAATCGATGCTGTTGTTAAACAAAAGATGCGTTTTACACAAGCATCAGCTAAATATGGTATACCAAAAGGTACATTATACGATAATATATTAGGTAAATCAAAACGTATGGCCGTATTAGAAGAAGCTGGTTTATCTGGACAAGAAGAGGCGGCtgttttagaattttgttgtGATGTATCTGTATCGCCATATAATCGACgtacaaaaaaatcattgaaatcgGTATTgggttttgttgaaaaattacgTCGTAATCGTGATCCTGATTTTATGTTTACTGGTTTATCAGGATTCCGTTGGTGGTGGGCATTTTCAGACAGTTATCAATATCAGTTGCAATCAATGTGGCAAAAATGTTGGAATACAAATCAAAGTTTAGTACATAATTTGCGCTTCCGTGAACGTGGCCCATTGAAATCATGGCGACCAGAAACAATGGCCGAAGCGATATTTTCTGTTTTAAAAGAAGGCTTATCATTATCGCAAGCAGCTAGAAAATATGATATACCATATCCGACATTTGTATTATATGCAAATCGTGTACATAATATGTTAGGACCATCAGCGGACGGCGGTTCAG
- Protein Sequence
- YPTLLKLKTPTWTQDQLKEAIDAVVKQKMRFTQASAKYGIPKGTLYDNILGKSKRMAVLEEAGLSGQEEAAVLEFCCDVSVSPYNRRTKKSLKSVLGFVEKLRRNRDPDFMFTGLSGFRWWWAFSDSYQYQLQSMWQKCWNTNQSLVHNLRFRERGPLKSWRPETMAEAIFSVLKEGLSLSQAARKYDIPYPTFVLYANRVHNMLGPSADGGS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01226539; iTF_00307491;
- 90% Identity
- iTF_01226539;
- 80% Identity
- -