Ztra025607.1
Basic Information
- Insect
- Zhengitettix transpicula
- Gene Symbol
- -
- Assembly
- GCA_037074705.1
- Location
- CM073592.1:6376107-6382849[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.00011 0.038 16.0 0.1 2 23 175 196 174 196 0.97 2 17 0.00063 0.21 13.7 0.1 1 23 202 225 202 225 0.95 3 17 0.043 14 7.9 1.3 3 21 258 276 258 278 0.95 4 17 0.027 8.9 8.6 0.9 1 20 308 327 308 332 0.90 5 17 6.5e-05 0.022 16.8 2.9 2 23 338 359 338 359 0.98 6 17 0.00012 0.039 16.0 0.5 1 23 367 389 367 389 0.97 7 17 0.012 4.2 9.6 2.0 1 23 395 417 395 417 0.82 8 17 0.00047 0.16 14.1 2.2 1 23 423 446 423 446 0.97 9 17 0.093 31 6.9 1.2 2 23 453 474 452 474 0.74 10 17 0.00036 0.12 14.5 0.6 2 23 490 511 489 511 0.96 11 17 0.017 5.7 9.2 0.2 1 23 519 541 519 541 0.92 12 17 1.4e-05 0.0047 18.9 1.4 1 23 570 592 570 592 0.98 13 17 1.7e-06 0.00055 21.8 0.6 1 23 598 620 598 620 0.99 14 17 5.2e-05 0.017 17.1 0.1 1 23 626 648 626 648 0.99 15 17 0.00083 0.28 13.3 2.6 1 23 654 676 654 676 0.98 16 17 3.5e-07 0.00012 23.9 1.2 1 23 682 704 682 704 0.99 17 17 0.089 30 6.9 0.1 1 21 711 731 711 732 0.93
Sequence Information
- Coding Sequence
- ATggcagatctcgagggagaaggagGTGCAAGCAGTTGTGTGGTAGATTGCAAGGGAGAAGGACGTGGATGGAAGCAGTTGGATGGCAGATCTCGAGGGAGGAGGTGGTGCAAGCAGTTGTGTGGTAGATTGCAAGGGAGAAGGACGTGGATGGAAGCAGTTGGATggcagatctcgagggagaaggagGATCCTGTAGCCACCATTCACCCTGTCCAGAGTCTAGTCCAGAGTTTTTCAAAGTTGTCAAACTTAATGCAGAACCTAGATAAGTTGTTGGTGgacAGAGGGGTGGATCAAACCACTCATGATCCAACGGTAGCTCAGATTTTTGGAGAGGACAATGATGACATAGACCTTATTGTTGCTAGTGCAGCAAGGAACAATGTCCAGTCtgaaagtaataatttgaaGCCAAATGAAGATCATTCAAAGAACACAGATAAAAGTGAATCACAGAAATTAGAAACTGACTTGGAAAACTTGTTTGAACTCCACAAAATTAGTATTAGTTTTCCAATACCTTGTGATTTTTGTGAAAaaacttttactgatttggaagaATTTGATGTACACATTCTAACTCACAGGGAAAGTCGCTTCTTCTCCTGCCAGTTATGTCCCAGTACGTATGTCTCGTGGGGCAATTTGGTCGCTCATCGCAAGGCGTCTCACCGTGGAAAGATGTTGAGTTGTACGTCATGTCGAAAGCGCTGTTACCATCCAGGTCTTGGACCTGTAAATTATCCAGTTAGTGGATTTCCTATCGGATGTGAAGAATGCCAAGCTGGCTTCACCACCATAGTACAACTGTACCGGCACTATCGCTGCCACAGTAAACAGAGAGCTAACGGTGCCAACTCGGAGgaATCGGAGCTACCGTCTGGCATTGGACTGTATGGACCACCACCTCCTGACAGTCATAGGTGCCAGATTTGCAAGAAAGAATTCCTTAATGATGAGCAGCTACGTGCACATACTGCTCAACTTCAACATAATGACGGCTCTAACACCTGCAGCATTTGTGGCCGCAAATTTTGTGACGCACGGACTTTAGCACTACATAAACGTCGTCACCCAGATGCGGTAGTCAAGTCCTTTATGTGTTCACAGTGTGGCCGTGTTTTGAGAGATAGAGCTAGTTACCaaagacataaaataatacacaacagTGAAAAACCATTTCGTTGTACCTCTTGTCCTAAATCATTCAATCGTAAATCAATCCTCAGTTTTCATATGTACCTTCATCCTGCTAGGGAAGATTACAGATGTTTCAACTGCAAAATGTCTTTCATTGATACAAAGGAGCTCAAAGATCATCTGAAGCAGACTCATCAACATGACTCCAGCCTGgTGTGCGATATATGTCAATCGGTCTTCAGTGTGAAGAGTTTACTTAAGCATTACATGAGCTGTCATGCAGCAAGGAAAGCGAGGTCTGGGCCTCAGCGCCGAATTAATCTCACCTGCCCTATTTGTCAAAAGCTATTCTCTCAGCCATCGATTTTGCACCGCCACTTGTTGCTACATAACCCAACACTGAAAAAAGGGCACAAGTGTGATATTTGTGGAAAAACAGTTTTAAGAAAGGCAaatATTCCAGCTCACATTCGTGCACATTTTGGAAATGATGAGAATCGTATTCCTATGCGGTACAGGCCATTGCTGGAATCAAAACAGCAGAGCAAACCACCTCAGAAGTGCTTCACTTGTGAATATTGTGGTAGAGAATTTAGAAAAGCTATACATATGAAGGTTCATGTGAGGTGGCACACGGGTGAGAAGCCGTACCGCTGTGAATTATGTGACAAAGCATTTTACACCAATCAACAGTTGGTGATTCATGTGAGGAGGCACACTGGAGAGAGGCCATATCAGTGCACAGCTTGTAATAAGAGCTTTGCTGGCCCCACTGCCCTCTATGCACATCGCAAAGTTCATAGCAAGGTTAAAAGATACAATTGTCCCCACTGCAACAAAGAATTTTTCTGGCGTTCAGAATTCATAAGTCACGTCCGTCGCCATACAACAGATAGACCCTATGTCTGTTCTATTTGTGATAAATCCTTTACTTTAAAAGGCAAACTAAATCTTCATATGAAGAAACATGAAACTGATCATCAATTATTCCGTTGCTCTGATTGTGGCGACAGCTTTTTGATGGAGCAAGAGCTGGCAAGGCACATCAAGAATCAAGGCTGTGATGCATCTACTGCGTAA
- Protein Sequence
- MADLEGEGGASSCVVDCKGEGRGWKQLDGRSRGRRWCKQLCGRLQGRRTWMEAVGWQISREKEDPVATIHPVQSLVQSFSKLSNLMQNLDKLLVDRGVDQTTHDPTVAQIFGEDNDDIDLIVASAARNNVQSESNNLKPNEDHSKNTDKSESQKLETDLENLFELHKISISFPIPCDFCEKTFTDLEEFDVHILTHRESRFFSCQLCPSTYVSWGNLVAHRKASHRGKMLSCTSCRKRCYHPGLGPVNYPVSGFPIGCEECQAGFTTIVQLYRHYRCHSKQRANGANSEESELPSGIGLYGPPPPDSHRCQICKKEFLNDEQLRAHTAQLQHNDGSNTCSICGRKFCDARTLALHKRRHPDAVVKSFMCSQCGRVLRDRASYQRHKIIHNSEKPFRCTSCPKSFNRKSILSFHMYLHPAREDYRCFNCKMSFIDTKELKDHLKQTHQHDSSLVCDICQSVFSVKSLLKHYMSCHAARKARSGPQRRINLTCPICQKLFSQPSILHRHLLLHNPTLKKGHKCDICGKTVLRKANIPAHIRAHFGNDENRIPMRYRPLLESKQQSKPPQKCFTCEYCGREFRKAIHMKVHVRWHTGEKPYRCELCDKAFYTNQQLVIHVRRHTGERPYQCTACNKSFAGPTALYAHRKVHSKVKRYNCPHCNKEFFWRSEFISHVRRHTTDRPYVCSICDKSFTLKGKLNLHMKKHETDHQLFRCSDCGDSFLMEQELARHIKNQGCDASTA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00678911;
- 90% Identity
- iTF_00678911;
- 80% Identity
- -