Basic Information

Gene Symbol
SMARCC2
Assembly
GCA_037074705.1
Location
CM073591.1:125382022-125403663[+]

Transcription Factor Domain

TF Family
MYB
Domain
Myb_DNA-binding domain
PFAM
PF00249
TF Group
Helix-turn-helix
Description
This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 1 1.2e-13 4.7e-10 41.0 0.3 3 44 591 632 589 634 0.95

Sequence Information

Coding Sequence
ATGATGTCCTTAGCGCCAAAAAAGGATGGTGGACCGAATtccaaattttatgaatcaccaGAAACAATATCTCTGTTTGATGGTATACGAACGTGGCTtcaaaaaaactgcaaaaagtatgtACAAACTGATCCACCAACAAACAAGGGATTGGCTGCATTAGTAATacagttaattcaatttcaagaaGATAATCTTGGCAAGAATGTCAGCAAACCACCTCTCACAAGACTCCctatGCGGTGTTTTCTGGATTTCAAACCTGGAGGAGCTTTATGTCACATTTTGGCAACAGTGTATAAGTTTAAAAGTGATCAAGGATGGAGAAGATTTGATTTTCAGTCTCCATCACGAATGGACAGAAATGTTGAAATGTTCATGAATGTGGAAAAAgtattaatacaaaacaaatgTATTATAATGCCTATTGTTTATGTCCGTTCTGAAGTGGACAAAGCAGTTCAGGCAAAAGTGAAAGATATTATTAAACGCCACCAAGGATCAATTACTGATAATGAAGACGAGGCAACACACATTATTTATCCATCATGTGATCCATTGGAAGAAGAATACGCCCGACCAACAATGAAACGTGATAGATCAGTTTTACTTCATTGGTATTACTTTCCTGATAGTCATGATATCTGGACAAATGTAGAATTACCAGTAGACCCACCTGACTCACCTGCACCCCATACAGGTCCTTGGCGAGTTGCAGCTACTTGGGTTCTGgatattgaacaatataatgaATGGATGACTGAAGAGGATTATGAAGTTGATGAAAATGGCCGGAAAAAAGTTCATAAACTGCGTTTATCTGTGGAAGATTTAATGAGTCAATCTGATCCAGACCGAACAAAAAAGAAACCAAAGAGAAAGCGATCCCCTTCACCGCCTCCTAAGCAAGTTAAGAGGAAAAGTGGCCGCAGTCCAGCTGTGGGTGTTAGTAAGAAACATAAAAGTGAAGAGGAGGCTGATGATCTTACTAAGGAAATGGATGAACCTCCTTCAGAACCCAATATTCAGGAAGTCGCTGTTCCAAAACCAGGATCATCATCGAAAAAAGATAATGACTTGCAACCCATTAAAGGAGGTATGATTGCCGATCTAGATGAAGATGGGGATAAAGGAGAAGACAGCCAAACTGGCAAGAATTCTGAATCAAATACAcagGATTACAGTAACAAAGATGATGGGCAAGAAGATAATGTAACTGAACAAACTCATCATATTATCATTCCGAGCTATTCAGCATGGTTTGATTACAATTCTATCCATACTGTGGAGAAACGAGCATTACcagaattttttaatggaaaaaataagtcAAAGACTCCTGAAATATACCTAGCATATCGTAATTTTATGATTGATACCTACAGACTTAATCCTACAGAATACATTACAAGTACAGCCTGTCGTCGCAATTTGGCTGGTGATGTTTGTGCAATAATGAGAGTACATGCATTTCTGGAACAATGGGGTCTCATAAATTATCAGGTTGACTCAGACAGCCGTCCAACGCCGATGGGACCGCCACCCACTTCACATTTTCATGTACTGTCTGACACTCCATCTGGACTCCAACCTATAAATCCCCCAAAAACGCCTCAGCCATCTGCCGCTAAAACACTTCTGGATTTGGACAAGAAAGATGGGCTAAAAAAGATGGATACAGATCCAGGATCTAATTTTGGTCTGAAGCTTGACCAGTACACTAGGAAGCCTGCAGCTTTGAGAAATAAAACTGCTGCTAGCATGACAAGAGAATGGAATGAACAAGAGACATTATTGCTTTTAGAAGGTTTAGAGCTGTACAAAGACGACTGGAACAAAGTTTGTGAACATGTTGGTAGCAGAACTCAAGATGAATGTATTTTACACTTCCTACGCCTTCCAATAGAAGATCCTTACCTGGAAGATCATGAAGCTGGAGGAGGAGCATTGGGACCATTAGCCTATCAACCTATACCTTTCAGTAAAGCTGGGAATCCTATAATGTCTACTGTTGCATTTTTGGCATCTGTTGTTGATCCAAGAGTTGCAGCATCTGCAGCTAAAGCTGCTATGGAAGAATTTGCCAGTATAAaggatGAAGTTCCTGCTGCATTAATGGATGCTCATGTGAAGAATGTTGAAGCATCGTCAACAGAAGGCAAATTTGATCCTGCTGCTGGTTTGGCtcagAGTGGTATTGCTGGGACAGTACCTGAGAAAGATGATGATGCCAATGAAAAGGAGAAAAAGGAAGATGATAAAGATGCAGAGGATAAATCAAGTGATAATGAAAGTTCAATAAAGAAAGAGGGTGATAAACCTGAACCAATGgaagttgataaaaaaattgaagagaaAGATGCAAAGGATGGATCTGAAGATGAAAAATCCGATGATAAAATGGAAGTTAAGGAAGATGAGAACAAAGAATGTGCAGATGAAGTTGTACCGGAAACAACGGAACAAGAGAAAGTTGTGAAAGATGCTCAGCTACAATCTGCAGCTGCTGCTGCTCTTGCAGCTGCAGCAGTGAAAGCAAAACATTTGGCAGCTGTGGaagaacgaaaaataaaatcattagtGGCCCTCTTGGTTGAAACTCAGATGAAGAAATTAGAAATCAAACTACGTCACTTTGAAGAATTGGAAACGACAATGGAACGTGAACGAGAAGGTTTGGAGTACCAGCGCCAGCAGCTTATTACAGAGCGTCAGCAATTTCATTTAGAGCAGTTGAAAGCTGCAGAATTTCGTGCCCGCCAACAAGCCCACCAAAGGTTAGCAGCTGAAGGTGTTGGTTGGGCACAAGCAGGTGCCCATCCAAGTCCAGCACCCCCTACTCCTGCAGGACCAGCTGTTCACCCTGACCAGTCTGTAACTCCTAGCACAACCCCAACTCCACCTTCACCTCAAGCATCTGGCCCCCCTCATGCAGGAGCTACCGCAGTCCCAAACATGCATCCAGTTGCAGCAAGTTCCCCATCACCAGGTCCACCTCAGCAGCCAGTGTAA
Protein Sequence
MMSLAPKKDGGPNSKFYESPETISLFDGIRTWLQKNCKKYVQTDPPTNKGLAALVIQLIQFQEDNLGKNVSKPPLTRLPMRCFLDFKPGGALCHILATVYKFKSDQGWRRFDFQSPSRMDRNVEMFMNVEKVLIQNKCIIMPIVYVRSEVDKAVQAKVKDIIKRHQGSITDNEDEATHIIYPSCDPLEEEYARPTMKRDRSVLLHWYYFPDSHDIWTNVELPVDPPDSPAPHTGPWRVAATWVLDIEQYNEWMTEEDYEVDENGRKKVHKLRLSVEDLMSQSDPDRTKKKPKRKRSPSPPPKQVKRKSGRSPAVGVSKKHKSEEEADDLTKEMDEPPSEPNIQEVAVPKPGSSSKKDNDLQPIKGGMIADLDEDGDKGEDSQTGKNSESNTQDYSNKDDGQEDNVTEQTHHIIIPSYSAWFDYNSIHTVEKRALPEFFNGKNKSKTPEIYLAYRNFMIDTYRLNPTEYITSTACRRNLAGDVCAIMRVHAFLEQWGLINYQVDSDSRPTPMGPPPTSHFHVLSDTPSGLQPINPPKTPQPSAAKTLLDLDKKDGLKKMDTDPGSNFGLKLDQYTRKPAALRNKTAASMTREWNEQETLLLLEGLELYKDDWNKVCEHVGSRTQDECILHFLRLPIEDPYLEDHEAGGGALGPLAYQPIPFSKAGNPIMSTVAFLASVVDPRVAASAAKAAMEEFASIKDEVPAALMDAHVKNVEASSTEGKFDPAAGLAQSGIAGTVPEKDDDANEKEKKEDDKDAEDKSSDNESSIKKEGDKPEPMEVDKKIEEKDAKDGSEDEKSDDKMEVKEDENKECADEVVPETTEQEKVVKDAQLQSAAAAALAAAAVKAKHLAAVEERKIKSLVALLVETQMKKLEIKLRHFEELETTMEREREGLEYQRQQLITERQQFHLEQLKAAEFRARQQAHQRLAAEGVGWAQAGAHPSPAPPTPAGPAVHPDQSVTPSTTPTPPSPQASGPPHAGATAVPNMHPVAASSPSPGPPQQPV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00894715;
90% Identity
-
80% Identity
-