Lnig002125.1
Basic Information
- Insect
- Leuctra nigra
- Gene Symbol
- SMARCC2
- Assembly
- GCA_934046545.1
- Location
- CAKOHC010000167.1:1-7248[-]
Transcription Factor Domain
- TF Family
- MYB
- Domain
- Myb_DNA-binding domain
- PFAM
- PF00249
- TF Group
- Helix-turn-helix
- Description
- This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1.6e-13 2.7e-10 41.4 0.3 3 44 595 636 593 638 0.95
Sequence Information
- Coding Sequence
- atgatGTCTTTGGCACCGAAAAAGGATGGAGGACCGAATTCAAAGTTCTTTGAGTCTCCGGAAACAATATCTCTGTTCGACGGAATTAAAACTTGGCTTCAGAGAACATGCAAGAAATATGTGCAAACGGACCCACCCACAAACAAGAGCTTGGCTGCATTGGTTATCCAGATGATCCAATTCCAAGAGGACAATCTTGGCAAAAACGTCAGCAAGCCACCACTTACAAGGCTGCCGATGAGGTGTTTTCTGGATTTCAAGACCAACGGAGCTCTGTGCCACATCTTTGCAACGGTTTACAAGTTCAAGAGTGAGCAAGGATGGCGTCGCTTTGACTTTCAGTCACCTTCGCGGATGGATCGCAACGTCGAGATGTTCATGAATGTGGAGAAAGTGCTGATTCAGAACAAGTGCATCATTATGCCGAATGTGTTTGTACGCCCTGACGTAGACAAAGGAATGCAGGCAAAGATCAAGGATATCATCAAGCGCCATCAAGGATCTGTAACAGACAATGAAGAGGAAGCGACGCACTTGATCTACCCTCCTTGCGACCCCACTGAAGAGGAGTATGCTCGCCCGACGATGAGACGTGACCGCATGGTGCTGCTGCATTGGTACTACTTTCCCGACAGCCATGACACGTGGACCAACATGGAGCTGCCCGTGGAGCCCCCAGACTCCCCTCCTCCGGTGCCCCAGCAGTGGCGGGTGGCGGCATACTGGGTCTTGGATCTGGAGCAGTACAACGAGTGGATGGCAGAGGAAGACTACGAGGTGGATGAGAGTGGGCGCAAGAAGGTGCACAAACTGCGCCTCTCTGTGGAGGACGTCATGAGCCAAGGCGACCCGGAGCGCAGCAAGAAGAAGCAGAAGAGGAAGCGGAGTCCTTCGCCGCCGCCCAAGCAGGGCAAGCGGAAGAGCGGCCGCAGCCCGGGGGTGGGAGGAAGCAAGAAGCATCGAGGGGAAGAGGAGGCGGATGACCTCACCAAAGAGATGGACGAGCCGCCGTCCGAACCCAATATCCAGGAAGTCAGCGTGCCTAAAGCTAACTCCGGCTCGTCATCCAAGAAGGACAATGATCTGCAGCCGATCAAGGGTGGAACAATGGCCGACCTCGATGAGGAGGCGGAGAAGGCCGGAGAAGACAGCCAGACCGGCAAGACATCGGAGAACAACACGCAGGAGGTGACTGCGCCGCGCGACGACGGCATGGAAGACAACGTGACGGAGCAGACCCACCACATCATCGTGCCGAGCTACTCCGCCTGGTTCGACTACAACTCGATCCACACGGTGGAGAAGCGAGCGCTGCCCGAGTTTTTCAACGCCAAGAACAAGTCCAAGACGCCGGAGATCTTCCTGGCGTACCGCAACTTCATGATCGACACGTACCGGCTGAACCCCACCGAGTACATCACGAGCACGGCGTGCCGGCGCAACCTGGCCGGCGACGTGTGCGCCATCATGCGCGTGCACGCCTTCCTGGAGCAGTGGGGGCTCATCAACTACCAGGTGGACTCGGACAGCCGACCGACCCCGATGGGTCCGCCTCCGACCTCTCACTTCCACGTGCTCTCGGACACGCCGTCGGGGCTGCAGCCCATCAACCCCCCCAAGACCCCGCAGCCCTCGGCAGCCAAAACCCTGCTGGATCTGGACAAGCGGGACCCCACACGCAAGCCGGACCAGGACCCGGGAGCAAACTTCGGACTCAAGCTGGACCAATACGCGCGCAAGCCCGCCGCGCTGCGCAACAAGACAGCCGCGAGTCTGACGCGCGAGTGGAATGAGCAGGAGACCCTGCTGCTGCTGGAGGGTCTGGAACTCTACAAGGACGACTGGAACAAAGTGTGCGAGCACGTCGGCAGTCGAACACAGGACGAGTGCATACTTCACTTCCTGCGACTTCCGATAGAAGATCCTTATCTTGAGGATCATGAAGCAGGGGGCGGAGCTCTGGGTCCGCTAGCCTATCAGCCAATCCCATTCAGCAAGTCGGGCAACCCTATCATGTCAACGGTTGCATTCCTGGCCTCGGTCGTTGACCCCCGGGTGGCCGCTTCAGCTGCCAAGGCCGCTATGGAGGAGTTTGCCAGCATCAAGGACGAAGTTCCGGCCGCTTTGATGGACGCTCATGTGAAGAATGTGGAAGCTTCGACCACCGATGGCAAGTACGATCCGGCTGCCGGTCTCGCTCAGTCCGGAATAGCAGGAACACAGCCGGACAAGGAGGAGGAGCCAGTCGacaaggagaagaaggaagagaaggagaagaaagaagaggtCGAGGAAAAGTCCGAGGCAATGGAGATTGATAAAGAGGAGAAAGAAGAAAAGGAAGTGGAGAAGGaagagaaggagaaggagaaggaaaaAGAGGAAAAGGAAAAGGAAAAGGAGGAGGAGAAGGCAGTGGAGGTGGAAGTGAAGGAGGAGGCAGTGGAGAAGGAG
- Protein Sequence
- MMSLAPKKDGGPNSKFFESPETISLFDGIKTWLQRTCKKYVQTDPPTNKSLAALVIQMIQFQEDNLGKNVSKPPLTRLPMRCFLDFKTNGALCHIFATVYKFKSEQGWRRFDFQSPSRMDRNVEMFMNVEKVLIQNKCIIMPNVFVRPDVDKGMQAKIKDIIKRHQGSVTDNEEEATHLIYPPCDPTEEEYARPTMRRDRMVLLHWYYFPDSHDTWTNMELPVEPPDSPPPVPQQWRVAAYWVLDLEQYNEWMAEEDYEVDESGRKKVHKLRLSVEDVMSQGDPERSKKKQKRKRSPSPPPKQGKRKSGRSPGVGGSKKHRGEEEADDLTKEMDEPPSEPNIQEVSVPKANSGSSSKKDNDLQPIKGGTMADLDEEAEKAGEDSQTGKTSENNTQEVTAPRDDGMEDNVTEQTHHIIVPSYSAWFDYNSIHTVEKRALPEFFNAKNKSKTPEIFLAYRNFMIDTYRLNPTEYITSTACRRNLAGDVCAIMRVHAFLEQWGLINYQVDSDSRPTPMGPPPTSHFHVLSDTPSGLQPINPPKTPQPSAAKTLLDLDKRDPTRKPDQDPGANFGLKLDQYARKPAALRNKTAASLTREWNEQETLLLLEGLELYKDDWNKVCEHVGSRTQDECILHFLRLPIEDPYLEDHEAGGGALGPLAYQPIPFSKSGNPIMSTVAFLASVVDPRVAASAAKAAMEEFASIKDEVPAALMDAHVKNVEASTTDGKYDPAAGLAQSGIAGTQPDKEEEPVDKEKKEEKEKKEEVEEKSEAMEIDKEEKEEKEVEKEEKEKEKEKEEKEKEKEEEKAVEVEVKEEAVEKE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01565544; iTF_00872204; iTF_00243123; iTF_00242125;
- 90% Identity
- -
- 80% Identity
- -