Basic Information

Gene Symbol
-
Assembly
GCA_031772095.1
Location
CM062649.1:21975233-21979854[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 17 0.083 8.3 7.8 0.0 1 23 112 135 112 135 0.94
2 17 0.0035 0.35 12.1 5.6 2 23 184 206 183 206 0.96
3 17 0.47 46 5.4 1.1 1 23 322 345 322 345 0.93
4 17 0.035 3.5 8.9 0.8 2 23 395 417 394 417 0.94
5 17 0.0026 0.26 12.5 1.5 1 23 470 493 470 494 0.93
6 17 3.8 3.7e+02 2.5 0.0 2 14 512 524 511 528 0.83
7 17 0.0015 0.15 13.2 1.9 2 23 544 566 543 567 0.96
8 17 0.00044 0.044 14.9 1.4 1 23 656 679 656 679 0.94
9 17 0.39 38 5.7 2.5 2 23 689 710 689 711 0.94
10 17 0.00022 0.021 15.9 0.1 1 23 752 775 752 775 0.93
11 17 1.4 1.4e+02 3.9 6.7 2 23 825 847 824 847 0.97
12 17 0.0012 0.12 13.5 0.2 1 23 904 927 904 927 0.96
13 17 0.013 1.3 10.3 2.9 1 21 979 999 979 1000 0.94
14 17 0.0044 0.44 11.8 0.2 2 23 1059 1081 1058 1081 0.95
15 17 0.23 22 6.4 1.6 2 23 1131 1153 1130 1153 0.95
16 17 0.0046 0.45 11.7 0.0 3 23 1245 1266 1244 1266 0.96
17 17 1.2 1.1e+02 4.2 0.7 2 23 1316 1338 1315 1338 0.92

Sequence Information

Coding Sequence
ATGGATCAACTATTCATGTTCTCAAACGAGTATACAGTGGATGACGATAACAATGCTAAGAATGGCAGCAATAAAGgggaaacaaaaatcaaaagcgaACCTCAAGAAATTATTAATGATGCTGAAGATGATAATAGCTATATAATGCCGGAatctttattacaacaaatgacaacaacacaCGGTGAAGATGGTGAAGGTGAGGATGATAataccattttcaattttgggatTGAATCAACTCCCAAGACACGGTCCTCATCAGCTATAGTGAAACCTTCATCCACAAAAAATCCTCAAGATGCATTAATTAACTATGATATGgctataatgtatatatgtccTGCTTGCGGTGCTGAATTCGATACGCAAAGTGTATGGAAGGGTCACATAAATGGAGTGCATGAGTACAATACTCGGCGTGGATTAAATTTTGTACCGATCGATAAGTTGTATCACAGATGTTTAGAGTGCAACAAACCCATTGCTATGCATGCAATGGAAAACTTACTGAAGCAtaaatttacacatttaccacatCGTTGTACTAAATGTAAGATATGTCATCGTCGTTATAAATATCGACAGGACTTAATTGTACATTTGCGTTTGTGTCATCGTGAGGAGGTGATATTAATGATGGAAAGCGAAAACATGTCGACTAGCAACAGGCATGAACATAGACGAGCATCGGTTCCTGCCATGAAAAATCCTCAATTGGAAATCAAGGATATTAAAGGTAATGCTGTGGACATTTTCGAGAACACGTGTGATAGTGTTGAGGTAAAAAATGAACCAGTTGATCCTGACGATCAAGATGCGGAAAATTTGCTGGTACAAACAGGAAGTAAATCAAAGAGTTCGCGGACCTCAATACTAGAAGATGCACTTAGTCGAAGTTCTTCACAAATCTCCGAACAGCGACCGAGTGTTGATGAGAAACAAtgtgaaaaacatataaaatatatttgcccGGTTTGCAGCACGGAATTCCATATGAAAAACGAATGGCACGAACATGTACAAGAAATGCATAATTTTTGCACCATCAGTGGGCTTGGGTTTCAGAAACGTTTTAACTCGACAGTGGAATGTTTGGAATGCAAGCGGGTTTTGTCTGATAACTCAATAGACCAACTGCAACAACATAAATTTTCACATCTTCCATCCAAAACATGGTTACGTTGTAAGCTTTGTTTACGCTCGTTTATTACCTACAAAGATATAATAAAGCACTTGCTTAATCAACATCGTCTTGATGGCGAATTCGACGCAGATATGGACGACAGCCAGGACTATCGTTCTTTTGACCAATACACTGCGCCATCAAACGACTACGAAGATGAAGGGCAAGCTGAAGACCAACTAAAAGGCGATCTACGTGATATTTATGAAACACAAATTGATTATTTATGTCCTAAATGTGGTAAAGagttttttgaaagaaaaatgtgGAGAAAGCACATAGTTAAAGCACATCATTACACCGATTTGAAAACactttgttttgttgctgtgaACGAGCATCAATTGCAATGTCGACTATGCGGCAAAGTGATTACAAATGCTTACGGTGTTCAAAACGCCCAACAACATTACTTTACACATTTACCGCACAAAGCGTACATACGTTGTCGCCTATGTGCTAAGTCGTATACAGATCGCAAAGGCTTGGTTAAGCATCTACGTAAAGTGCATCATATTAATCCCAAAACGGCAGCGGCAGCACTATTAGCTAAAGCAAACAAGATGAGCCTACGTCTACCTATAACAGCGACATACCAAAAATCATCATCTGAACAAGTGAGCAGACCGCGTAAAGCACCTATTAAAGAAATCGTTCGTCATAACGGCGTAATATTTGAGATACAATTTTTGGACGAGGATAGCAATGATGACTCGTCATATGGTGGGAGAAATGATGATGACAAAAGCGATAATAGTTTTGCTATGCCCACGAGAAGACATGTATGCCCGGATTGTTACTCAACCTTCAGTACGGCACAAGAATTACGAAAGCATACACAAGAACAACATGATTTCAAAAAgccaacacaaacaaatgtttGCGGTCGTTGTTATTGTACGTTTGAGTCAGAGGCAGCGCTACAAGACCACAAACTGAAACATCATTCAGAGAATGCTAATGATGGTAACAATGATGATAACGAGTTACTCTTGGTACCCACTGGCAATGAGGAAGTGAAAAATAACACTGGTGAGGAGACTCCAAACATAGAACAATATTTTTGCTATCTGTGTCCGGCATGTGGTGAGGAGTTTAAAACACAATATGAGTGGCGTCGCCACATAAACGATATACACTACTTCGATCGACGGTATGATTTGAATTTCAAGCAAATtgataaatttcatttccagtgtttggaatgtaaggaaattGTGAACAGTGCTAAATTAAAAGGTCTGCAAGACCATAAATTCCGTCACTTAccatataaattatacataaaatgtCGACTCTGTAGCACATGCTACAATCACAAACCCAATGTGGTCACACATCTGTGCACGCAACACAATTTCGTACATCCGAGTAAAACTTCCAATTCAAGACCAGCTATATCACCCGCGCCGCAAATGCGTAAAACATATAACATGCAAGCAACTTCATCCAACACTTTCAAGCCCTTGACAACTGAAAGCATAATTTCCTTACACAATGCAGTGGAACACGAAACGATTACCTACAATTGTCCGCAGTGCAATGAACCATTTGACACCCATGCCCTATGGCGTCAACATATCGTCACTGTGCATGATCTGAACAGTCGGCAAGGCTTGAATTTCCGTCAGTTAGACGCACACCATTACATATGCTTGGAGTGTTACAAACGTGTTACAGTAACTCATACAAAGGGCGCTATTGGTCAACTGCAGTCGCATAAATTCCGTCATTTGCCGTATAAATCCTTCTGTTGCACTAAATGTGGTGGTGTCTTTGTGCGCAAGCAAATGTTCTTTAAGCATCTAAATCGTGCAACCAATAGATGTCCTTTGATGGGTAATGAACCTGGATTTCACCATAATATCAGAACAGGTGCTTATACGAATTCAATGCGTAACGTATACGGTCAGCAAACTGACGATAACAAACCATTGAAGAATCTAAACTTCTCGGTGACATCGAACGAAAAATGCCCATACATCATACAATGTCCACAATGTGGcattaaattcgaaaaatggCATCCATGGCGTGATCACATTGAGAAGGAACACAAGTTAAATAGTATGGAATCATTGAAATTCAAAAAGATCAATGATCACATGCACATTTGTATACAATGCAAGGAGCGTGTGAACGGTGCGAATTTTGTCAACCTGCAAACACATCGATTTAAGCACCTGCCATATGGCACTTATCTACATTGTCGCTATTGTGATGTCCGATACTATTAtatgattaatattattaaacatatGAAGGTAAAACATCCAAACCATGGCATGGAAGAGCTCGAGTTGGAATTGGAGAGTGCACCAGATGAAGGGTCCGTTGACTCGCCGTCGGTCACTGTGAGCATGGATGTGGATAAGGAGAGCGAGGAGAATAACTCGAATAATCCAACCGTTggtaatgataataaaaagcAGGATGACGCGCTTGCTATCCCTGCTAATGATGAAGACAAGGAAAAAGTTTCTGAAGAAAAGGATATTGATTATGGTTTTGGTTGCGAATCCTCGATATGTTCATACATTATATTATGTCCACAATGTGGTATGAAATATGATAATTGGTATACGTGGCGTGATCATATAGCATCAGCACATTCGTTAGACAGCCACACAGCGCTGAATTTCACAAAAATCTTTGATTGGTTGCAGGAGTGCAACGAGTGCAAAGAGCGTGTAAATGCCACATCACTATTTAATTTGCAAACTCACAAATTCAAGCATTTACCATTTGGTACTTATCTAGAGTGTCGCTACTGTGACGCCAAATATaactatataatacatattgttCGACACTTGAAGGCGAAACATCCAGAGCATGCATTGCAAAAGCAAGATAAACCCATTGATATTGACGAAAGTTTGTTGGACAATGTTGATGATGAAGAAGTTGAAGCAGATGCAGAAGTAGAGCGTAGCATTGGTGGCGAAGCAAAGCGTGTAAATAATGCAGATGTGGATGTAGACGCTGAGGGTGATGACGATGAGGATGCAGATGACGATATTGAAGATATGGATGATGATATCGATGaagatgttgatgatgatgatgaagatgacGATGAAGAAGGGGATATGGATGATAATGATATAAATGATGGTGGTGAAGTAGGCGAGCGTATGGATGTTGATGATTCTGAAGATGGTGATGACGATGAagatgatgacgatgacgatgataATGAGGAGGATGATGATGATAGTGAGAATTATGGTAATGATGATAATGTCGAAGATCCAGCTATCCACAGcgtaaatacaaatttagagACGCCAAACGGTGCAGTGGAGGATATTGAACAAGTTGAAGACCCCGAGGACCAATTTGTTCTTggttaa
Protein Sequence
MDQLFMFSNEYTVDDDNNAKNGSNKGETKIKSEPQEIINDAEDDNSYIMPESLLQQMTTTHGEDGEGEDDNTIFNFGIESTPKTRSSSAIVKPSSTKNPQDALINYDMAIMYICPACGAEFDTQSVWKGHINGVHEYNTRRGLNFVPIDKLYHRCLECNKPIAMHAMENLLKHKFTHLPHRCTKCKICHRRYKYRQDLIVHLRLCHREEVILMMESENMSTSNRHEHRRASVPAMKNPQLEIKDIKGNAVDIFENTCDSVEVKNEPVDPDDQDAENLLVQTGSKSKSSRTSILEDALSRSSSQISEQRPSVDEKQCEKHIKYICPVCSTEFHMKNEWHEHVQEMHNFCTISGLGFQKRFNSTVECLECKRVLSDNSIDQLQQHKFSHLPSKTWLRCKLCLRSFITYKDIIKHLLNQHRLDGEFDADMDDSQDYRSFDQYTAPSNDYEDEGQAEDQLKGDLRDIYETQIDYLCPKCGKEFFERKMWRKHIVKAHHYTDLKTLCFVAVNEHQLQCRLCGKVITNAYGVQNAQQHYFTHLPHKAYIRCRLCAKSYTDRKGLVKHLRKVHHINPKTAAAALLAKANKMSLRLPITATYQKSSSEQVSRPRKAPIKEIVRHNGVIFEIQFLDEDSNDDSSYGGRNDDDKSDNSFAMPTRRHVCPDCYSTFSTAQELRKHTQEQHDFKKPTQTNVCGRCYCTFESEAALQDHKLKHHSENANDGNNDDNELLLVPTGNEEVKNNTGEETPNIEQYFCYLCPACGEEFKTQYEWRRHINDIHYFDRRYDLNFKQIDKFHFQCLECKEIVNSAKLKGLQDHKFRHLPYKLYIKCRLCSTCYNHKPNVVTHLCTQHNFVHPSKTSNSRPAISPAPQMRKTYNMQATSSNTFKPLTTESIISLHNAVEHETITYNCPQCNEPFDTHALWRQHIVTVHDLNSRQGLNFRQLDAHHYICLECYKRVTVTHTKGAIGQLQSHKFRHLPYKSFCCTKCGGVFVRKQMFFKHLNRATNRCPLMGNEPGFHHNIRTGAYTNSMRNVYGQQTDDNKPLKNLNFSVTSNEKCPYIIQCPQCGIKFEKWHPWRDHIEKEHKLNSMESLKFKKINDHMHICIQCKERVNGANFVNLQTHRFKHLPYGTYLHCRYCDVRYYYMINIIKHMKVKHPNHGMEELELELESAPDEGSVDSPSVTVSMDVDKESEENNSNNPTVGNDNKKQDDALAIPANDEDKEKVSEEKDIDYGFGCESSICSYIILCPQCGMKYDNWYTWRDHIASAHSLDSHTALNFTKIFDWLQECNECKERVNATSLFNLQTHKFKHLPFGTYLECRYCDAKYNYIIHIVRHLKAKHPEHALQKQDKPIDIDESLLDNVDDEEVEADAEVERSIGGEAKRVNNADVDVDAEGDDDEDADDDIEDMDDDIDEDVDDDDEDDDEEGDMDDNDINDGGEVGERMDVDDSEDGDDDEDDDDDDDNEEDDDDSENYGNDDNVEDPAIHSVNTNLETPNGAVEDIEQVEDPEDQFVLG

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2