Zhep002809.1
Basic Information
- Insect
- Zelleria hepariella
- Gene Symbol
- RREB1
- Assembly
- GCA_949319315.1
- Location
- OX439379.1:5900030-5909410[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.0015 0.084 13.8 1.3 1 23 102 125 102 125 0.97 2 12 7.2 3.9e+02 2.2 0.8 1 21 158 178 158 179 0.86 3 12 0.027 1.5 9.8 0.1 1 23 306 328 306 328 0.97 4 12 0.47 26 5.9 0.3 1 23 335 357 335 357 0.96 5 12 0.0013 0.07 14.0 2.1 1 23 363 386 363 386 0.97 6 12 0.0036 0.2 12.6 1.6 1 23 729 752 729 752 0.96 7 12 0.0003 0.017 16.0 1.3 2 23 950 971 949 971 0.97 8 12 0.14 7.4 7.6 6.5 1 23 977 1000 977 1000 0.97 9 12 0.39 21 6.2 1.2 1 23 1035 1059 1035 1059 0.90 10 12 0.0048 0.26 12.2 0.5 1 23 1086 1109 1086 1109 0.96 11 12 0.028 1.5 9.8 0.3 2 23 1149 1170 1148 1170 0.92 12 12 0.034 1.9 9.5 5.3 1 23 1176 1198 1176 1198 0.97
Sequence Information
- Coding Sequence
- ATGGCCGTAGTCGCCTCCCAATTCGTTTTCCACACGATCGATCGCTTTCTCTCGAAGGAAAAGCGGTCTCTCTTCtgccATATCAAAACAGAAGAAGTCATCAGCGAGGCGAAAGGCGAGACCGAGAGCAACGAAGACTTCGAGGACGTCCAAATGGAGAGGCCGGAGAGACTTCGCACCACCAGTATCGACAGCGACAACCGCTCTGACCGAAGCGATGAAGAAGACACCAGAAGATCCCGCAAGAGGCCAGCGTCCCCCATGTCTCAGAGACAACTCAACGCCATCAAGAGAACAGCTGCCTTCGAGTGCCCCCACTGCCCGCAAGCTTTCGACTCAACCCACACCCTGGACCTGCATCGACTCACCGCACACCGCGACGACTCACGCGCTAACTTCAAAGACTTCGTCGCCTTCGCTACCAAGAAGTTTCCCGAAATCTCTCGAGGCATCCCCCACATGATTGAGAGATTCAGGTGCTCAAGATGCACTAGAGACTTCCCGTGTGCAGAAGCCCTGGACGTCCACCGGAAGTCATGCGTGTCACCAGCGAGAGTGTCCACGCCAGACAGTCGGGACAGGAGCGATTTTTTCGCCAAACTAGAGCTGAACCGGTCGTTTGGCATGCCGGAAACGTTGACCCCTCCCATGGAAAGATTCATCTCAAAGTATGACGATGGGAAGTTTGGGGAAAACGGGCTGAGGCACATGGATGCGCCCAGAGACCTCGCTGATATCCAGTCGATCATCAACGTGACATCTGCCCATACCTTGCTGCAGCGGCTGACGGAACCGCGCGCTCCAATGGAAAGCTCCATGCTCACTCCACCAGACACCATCATAAAGGACCGAGACCAAGAAGAAGCTCAAGACAGCTTTGCAGCTGAATTCCGACGGATGAAGCTGCGCGGTGAATTCCCGTGTCGACTTTGCCCGGCCAAGTTCCCCAATCTAAGAGCTCTCAAGGGTCATAACCGAGTCCACCTGAACGGCCCCGCGCCTTACCGATGCAACATGTGCCCTTTCGGCTCCTTGGAAAAAGCTTCAGTCACCCGCCATATGCGTGAACACAACGGTGATCGACCCTTCGAATGCGCAGTCTGCAACTACGCTTTTACCACCAAAGCTAACTGTGAGCGGCACTTGAGGAACCGGCACGCCAAGGTGACGAGGGAAGAAGTCAAGCGCTCAATCATTTACTACCCCTCTAAGGACCCGAGCAACAATGAGCACGCTCGCGATGACGTCAACAGATCGCTTTCATTCGGCTCTTCAGAGGTCATCGAGAGACGAAACGAATGCACCGGCCGCGAAACTCCCCGATCTCACTTCTCACCAAACTTCATCAATGACCGACACCCGGTATCCGCGTTGACACCGACCCCTCTGCCTGACACACCATCGACCACGCCGCTTGATTCCGACCATTCAATGTCCAAGATCAAAGTGAAGGCTATGGCTAAGCTGCAGCAAATTCCAGAATTCCGCCCTGAGATAACTTTCAAACCCAACGAGCCAGAGTCTGATGAATACGACGATGACGTCGCCATGGACCTGCGGACGAATGACGACAACTGCGAAGTCCTTGACCTCAGCAAGAAGAAACGTGATACTGATGATGAGCCAAAGGCCCCACAGCGGCCATCTTTCGGGCCAGACCCACCCGCAAATGCTTTTGAGAAAACCAGTTTCTTACTACCTCAACAGCAACAGCGTCTCTTCGATACACCAATGCCAAAGATTGACCCTGCATTCTACGCAACTCAGCTATCTCAGCTATACGCTGGCTCTATCCCTGGTCTACCAGGTTTGCCTTTACCCCCTTCTTTCCCACTCAACCCTTACTTTCTTCAAACCCCTTTTTTTCCCAACCCCGCTGACTCGCAAGAGCTCGCCGAGATAAAGCAGCGTTTGCAGAAGGAAATCATTCGTGCAGGTCTCAACTTGTCTGGCGGTGGCATCATGGCACCTGAACCTAAAGCCACTCAGCCCAAGCTGGAGCCGGAGGAAGAAGAGCAAAAACCGCCTCCCAGAGAAATCTCGCCAACACCACCACCGCGCCAAGAATCTCCTGTTTCTATCCCAAATACTTTAGTCGCACAGACTGACTCAGTAAAAATGGTGATCAAGAATGGCGTTCTCATGCCAAAGCAAAAGCAAAGACGCTACCGCACTGAAAGGCCTTTTTCGTGCTCGCAGTGCTCAGCACGTTTCACTCTTAGATCCAACATGGAGAGGCATGTTAAACAGCAGCACCCACAGCACTGGAGCATCAGAAGACCTTCTCCAAGGGCACCACCTCCCTACCCGACTTCGGACACTTTGGCTGACAGAGTGAAGTACGCCCTCTTAGCGCGTCACTTAGAGCGCCCTTTACAACAACCTGATCACTCTCCTATAAGAAGAGATTCGGATGAAGTCGCCGATAATGAGGATGAAGACGACACCCTGATCATAGACGAGGAAGACCAAGAAGACGGGAAGTCGGAAGAACTCACCGCAGCTCATCGAGCGGCCGCCGAAATTCTCATGGCGACGCGTCAGCAAGAACTGCACAAAGACTTTGACCTCAAAATCGCTGGAAACTTAATCAATAAGGCAGTTTCTTTGACTACCACGCCTAAGAAAACCGAGACCGGCACTGATCCCATACCTCTGGACTGCTCAGAACCTTTGCCTTTgcccactgtacctactcgCAGTGACGAAGAGGAAGATGAAGAAGGTTTAGTCGCATCCACTAGTGAAGGGAATAATTCTGGAAGCGACGAGAACaaGTCAGAATCCGACACCAGCGCTCAGCCACCAAAGAAGAAGTCCGCCTACAGCCTCGCGCCGAACCGAGTCTCGTGTCCGTACTGCCACCGCAAGTTCCCGTGGTCCTCATCCCTCCGTCGTCACGTCTTGACCCACACCGGCCAGAAGCCTTTCAAGTGCCCTCATTGCACCCTCCTCTTCACCACCAAGTCGAACTGCGATCGCCACCTGCTAAGAAAACATGGCGGCTCCGCCAGAGCTATCCTCGCAGAGACTGTGCCGGAGACCGTGTCACCGCCGCAGCCAGCCACTAATGATGCCACAAGGACCGTCCCAGAGCGACCTTTCAAATGCGCCTCCTGTCCCACCAGCACGTTTTCCTCCCTGGAAACTCTGAAGAAGCACCTGTCTTCGAGACATAGCGTGGGCGATTCCCAGCCAGGCTCTCCCAACCGGGAGGCTGCCGAAGATCGCGAGAGCCCCGACGGCAGCCTGGCGTTCAAGTGCCACCTGTGTGAGGCGTCGTTCAGTGACCGGGGAGGTGCGCTCAGACACCTGGCTTCGACCCACGCGATGGAGTATGAGCAACTGGTCAGCAAGGGAGCATTAGACGCGACGAGCGACCGCAGCGAGAGCGCTGACGACGATGACAGGGGGAAATTCCCTGACCACGCAAACAGGAAGGTGGTCTGCGCCTTCTGCATCCGGCGCTTCTGGTCAGCCGAAGACCTCCGCCGTCACATGCGGACGCACTCCGGCGAGCGTCCATTCGCTTGCGACCTGTGCCGGCGCCGGTTCACGCTCAAGCACAGCATGCTGCGGCACCGGAAGAAGCACAGGGACGAGCCCACTGATGATGACGAGGTCTCGCCGCCGAACACGCCGCTCGAGGGGCCGGCTAATGGATACCGTTACCATGACGACGACGGCTCTGGCAACGAGGTCCCAAGCaacgtcaacaacaacaactcgcCTCCCGCCGCGCCCTATGAGAAGAAGCTCAAAATCGAGATGGCCTCGCGCAAATACTCCTCGGAGGCGGAAAACGACGGCGAAACCGGCGGGGACCTGATAGGTAAACTCCTGGGCATCCACGACAAAACGATTGTCAATGAGCTCCTGTCGTCGGCCGACGTGGCGGCCAAGTTTTTGGGCGTGAACAAATGA
- Protein Sequence
- MAVVASQFVFHTIDRFLSKEKRSLFCHIKTEEVISEAKGETESNEDFEDVQMERPERLRTTSIDSDNRSDRSDEEDTRRSRKRPASPMSQRQLNAIKRTAAFECPHCPQAFDSTHTLDLHRLTAHRDDSRANFKDFVAFATKKFPEISRGIPHMIERFRCSRCTRDFPCAEALDVHRKSCVSPARVSTPDSRDRSDFFAKLELNRSFGMPETLTPPMERFISKYDDGKFGENGLRHMDAPRDLADIQSIINVTSAHTLLQRLTEPRAPMESSMLTPPDTIIKDRDQEEAQDSFAAEFRRMKLRGEFPCRLCPAKFPNLRALKGHNRVHLNGPAPYRCNMCPFGSLEKASVTRHMREHNGDRPFECAVCNYAFTTKANCERHLRNRHAKVTREEVKRSIIYYPSKDPSNNEHARDDVNRSLSFGSSEVIERRNECTGRETPRSHFSPNFINDRHPVSALTPTPLPDTPSTTPLDSDHSMSKIKVKAMAKLQQIPEFRPEITFKPNEPESDEYDDDVAMDLRTNDDNCEVLDLSKKKRDTDDEPKAPQRPSFGPDPPANAFEKTSFLLPQQQQRLFDTPMPKIDPAFYATQLSQLYAGSIPGLPGLPLPPSFPLNPYFLQTPFFPNPADSQELAEIKQRLQKEIIRAGLNLSGGGIMAPEPKATQPKLEPEEEEQKPPPREISPTPPPRQESPVSIPNTLVAQTDSVKMVIKNGVLMPKQKQRRYRTERPFSCSQCSARFTLRSNMERHVKQQHPQHWSIRRPSPRAPPPYPTSDTLADRVKYALLARHLERPLQQPDHSPIRRDSDEVADNEDEDDTLIIDEEDQEDGKSEELTAAHRAAAEILMATRQQELHKDFDLKIAGNLINKAVSLTTTPKKTETGTDPIPLDCSEPLPLPTVPTRSDEEEDEEGLVASTSEGNNSGSDENKSESDTSAQPPKKKSAYSLAPNRVSCPYCHRKFPWSSSLRRHVLTHTGQKPFKCPHCTLLFTTKSNCDRHLLRKHGGSARAILAETVPETVSPPQPATNDATRTVPERPFKCASCPTSTFSSLETLKKHLSSRHSVGDSQPGSPNREAAEDRESPDGSLAFKCHLCEASFSDRGGALRHLASTHAMEYEQLVSKGALDATSDRSESADDDDRGKFPDHANRKVVCAFCIRRFWSAEDLRRHMRTHSGERPFACDLCRRRFTLKHSMLRHRKKHRDEPTDDDEVSPPNTPLEGPANGYRYHDDDGSGNEVPSNVNNNNSPPAAPYEKKLKIEMASRKYSSEAENDGETGGDLIGKLLGIHDKTIVNELLSSADVAAKFLGVNK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01547041; iTF_01544390; iTF_01543369; iTF_01545291; iTF_01546132;
- 90% Identity
- -
- 80% Identity
- -