Basic Information

Insect: Yponomeuta plumbellus
Gene Symbol: RREB1
Assembly: GCA_947310845.1
Location: OX371214.1:10531107-10541268[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.19 18 6.9 0.9 1 23 78 101 78 101 0.90

2 11 0.022 2 9.9 0.1 1 23 289 311 289 311 0.97

3 11 0.38 35 6.0 0.3 1 23 318 340 318 340 0.96

4 11 0.001 0.096 14.0 2.1 1 23 346 369 346 369 0.97

5 11 0.0029 0.27 12.6 1.6 1 23 719 742 719 742 0.96

6 11 0.00024 0.022 16.0 1.3 2 23 938 959 937 959 0.97

7 11 0.11 10 7.7 6.5 1 23 965 988 965 988 0.97

8 11 0.31 29 6.2 1.2 1 23 1023 1047 1023 1047 0.90

9 11 0.0033 0.3 12.4 0.2 1 23 1075 1098 1075 1098 0.96

10 11 0.0018 0.17 13.3 0.2 2 23 1138 1159 1137 1159 0.96

11 11 0.027 2.5 9.6 7.2 1 23 1165 1187 1165 1187 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.19	18	6.9	0.9	1	23	78	101	78	101	0.90
2	11	0.022	2	9.9	0.1	1	23	289	311	289	311	0.97
3	11	0.38	35	6.0	0.3	1	23	318	340	318	340	0.96
4	11	0.001	0.096	14.0	2.1	1	23	346	369	346	369	0.97
5	11	0.0029	0.27	12.6	1.6	1	23	719	742	719	742	0.96
6	11	0.00024	0.022	16.0	1.3	2	23	938	959	937	959	0.97
7	11	0.11	10	7.7	6.5	1	23	965	988	965	988	0.97
8	11	0.31	29	6.2	1.2	1	23	1023	1047	1023	1047	0.90
9	11	0.0033	0.3	12.4	0.2	1	23	1075	1098	1075	1098	0.96
10	11	0.0018	0.17	13.3	0.2	2	23	1138	1159	1137	1159	0.96
11	11	0.027	2.5	9.6	7.2	1	23	1165	1187	1165	1187	0.97

Sequence Information

Coding Sequence: ATGGATATCAAAACAGAAGAAGTCATCAGCGAGGCGAAAGTCGAAACCAATAGCAACGAAGATAATATGGATGGCGTCAAGATGGAGAGACCAGAGCGACTTCGCACAACCAGCATTGACAGCGACAATCAGAGTGATCGAAGCGACGAAGAATATCACAGAAGATCGCGGAAGCGGGCCGCATCGCCGATGTCTCCGAGACAAATGAATGCCATCAAGAGAACTGCACAATACGAGTGTCCTCAATGCCCACAAGCCTTTGAGTCTACCCACACGCGAGACCTGCACAGATTCACCGCACATCGTGATGACTCACGCGCTGATTTCAAAGATTTCGTCGCGTTCGCCACCAAAAAGTTTCCAGAAATTTCAAGAAAATGTCCTGATATAGCCCGTGGAGGTCCATTTACAACTGACCGATTCAGGTGCGAAAGGTGCACCAGGGATTTCCCGTGCGGAGAAGCCTTGGATGTGCACAGAAAGTCTTGTGTTTCACCGGCGAGGGTCTCCACTCCGGATAGCCGAGACCGGAGTGATTTCTTCACCAAATTGGAGCTTGGCCGAAATTTCGGTGTCCCGGAAACATTGACGCCACCAATGGAAAGGTTCATCGCGAAATACGATGACGGAAAGTTCGCAGAAAATGGTCTGAGGCACATGGACTCGCGCAGAGACCTGGCCGATATCCAGTCCATCATAAATGTAACATCTGCCCATACCTTGTTGCAACGGTTGACAGAACCACGAGCTCCCTTAGAAAGCGCCATGTTGACTCCACCAGACACTGTCAGCAAAGACCGAGATCAAGAAGAGGCCCAGGACAGCTTTGCGGCGGAATTTCGACGAATGAAACTACGCGGAGAATTCCCTTGTCGACTTTGCCCTGCTAAGTTTCCCAATCTTCGCGCGCTGAAAGGTCACAACCGAGTCCACCTTAATGGCCCGGCACCTTATCGATGCAACATGTGTCCGTTTGGATCTCTAGAAAAGGCCTCAGTTACCCGGCACATGCGTGAACATAACGGAGACAGGCCCTTTGAATGTGCAGTTTGCAACTACGCTTTCACAACTAAGGCCAACTGCGAGCGTCACTTGAGGAACCGCCACGCCAAAGTAACGAGAGAAGAAGTCAAACGCTCAATTATCTACTACCCCTCTAAGGACCCAAGCAACAACGAGCACAGTCATTCTCGCGATGACACCAGCAGATCGCTCTCTTTCAACGCCTCAGAATCAATAGAGAGAAGGAACGAGTGCACCGGACGTGAAACTCCTCGGTCTCACTTCTCACCGAACTTTATTACCGATAGACACCCGGTATCTGCTTTAACTCCGACCCCTCTACCTGATACCCCATCAACGACACCACTTGACTCCGATCATTCAATATCCAAGATCAAAGTCAAGGCCATGGCCCAGCTGAAGCAAATCCCAGAATTTCGGCCAGAGATTACATTTAAAGCTAACGAGCCAGAAGATTCTGCTGATGAATACGACTATGACCACAATGAACCAATGAACCTGGTTGTAGATGACTGTAATGCACTTGATCTTAGCAATAAGAAACGTGATACGGATGATGAGCCAAAGGCCCCACCTAGACCGTCATTCGAGCCTGACCCAGTTTCTGTAGCCGCAAGTGCATTCGAGAAGACTAAGTTCTTACTAGCACAGCAGCAGCAACGGCTCTTTGACACTCCACTACCAAAGATTGACCCTGCTTTCTACGCAACGCAATTATCTCAGCTGTACGCAAGTACTATCCCTGGTCTTCCAGGCTTACCTCTAACCCCATCATTCCCACTCAACCCTTACTTTCTTCAAACTCCTTTTTTTCCCAATCCAACTGACTCTCAAGAACTCGCCGAGATAAAGCAGCGACTGCAGAAGGAGATCATCCGTGCGGGTCTAAACTTGTCTGGTGGTGGAATTATGACGCCCGAACCTACAATTGCTCAGCCCAAGGAGGAACCAGAAGAAGAGGAACAGAAACCGCCACCAAGAGAATCCTCGCCAAAACCGCCACCACGTCCAGAATCTCCCGCTCCCTTACCCAACACCTTAGTCTCACAGACAGACTCAGTGAAAATGGTGATCAAAAATGGTGTCCTAATGCCCAAGCAGAAGCAGAGGCGTTACCGCACTGAGCGTCCGTTCTCGTGCTCCCAATGTTCAGCGCGCTTCACACTCAGATCTAACATGGAGCGCCATGTAAAGCAACAACACCCACAACACTGGAGTAACAGACGACCTTCTGCAAGAGCACCACCACCGTATTCCACATCGGACACCCTGGCTGATCGAGTGAGGTACGCTCTCCTAGCGCGGCAATTAGAGCGCCCTTTACAACAACCGGATCACTCTCCCGTAAGGAGAGACTCCGATGAAGTCGCCGACAATGAGGATGAAGACGACACTCTGATCATAGACGAAGAAGACCAGGAAGATGGAAGACCAGAAGAACTCACGGCTGCCCATCGAGCGGCGGCTGAAATCCTCATGGCAACTCGTCAGCAAGAACTCCACAAAGACTTTGATCTCAAAATCGCCGGGAACCTAATAAACAAGCCTGTCTCTTTGACGCCCGAGAAAACCGAGACCGGCACTGATCCCATACCTCTGGATAGTCAAGACCCGCTGCCTTTACCTATCGTTCCTACTCGCAGCGATGAAGAAGAAGACGAAGAAGGGCTGGTAGCATCTACCAGTGAAGGGAATAATTCCGGAAGCGACGAGAACAAGTCAGAATCGGACACAAATGCTCAGCCACCAAAAAAGAAGTCCGCATACAGTCTGGCTCCGAACCGCGTCTCCTGTCCGTACTGCCACCGCAAGTTCCCGTGGTCCTCGTCTCTTCGCCGGCATGTCCTAACCCATACTGGACAAAAGCCCTTCAAATGCCCCCACTGCACCCTTCTCTTCACCACCAAATCCAACTGTGACCGTCATTTGCTGAGAAAACACGGCGGATCCGCCAGAGCAATCCTAGCTGAACCTATACAAGAAACTGTGCCTCAACCGCAGCCAACCTCCAATGACACCACAAGGACCGTCCCGGAAAGACCTTTCAAGTGTGCCTCGTGCCCTACTAGCACGTTTTCTTCCTTGGAAACGCTGAAGAAGCACTTGTCTTCACGACATAGCACTGCTGATTCGCAACCAGGCTCTCCCAGCGAGGAAACTCCTGAAGACCGCGAGGGGAGCCCCGACAGTAGTCTGGCGTTCAAATGCCATCTGTGTGAGGCATCTTTTAGTGACCGTGGGGGTGCATTGAGACATCTGGCATCGGCTCACGCGGTGGAGTACGAGCAGCTGGTCAGCAAGGGAGCTTTGGACGCGACCAGTGACCGTAGTGAGAGCGCTGACGATGACGACAGAGGCAAATTCCCTGACCACGCCAACAGAAAGGTGGTCTGCGCCTTTTGCGTCCGCCGCTTCTGGTCTGCGGAGGACCTTCGTCGGCATATGCGCACACACTCCGGCGAGCGACCGTTCGCCTGCGACCTGTGCCACCGCCGGTTCACGCTCAAACACAGCATGCTGCGCCACCGGAAGAAGCACAGGGACGAGCCCACTGACGACGAAGAAGTCACGCCACCGAATACGCCGCTGGAAGGGCTGGCTAATGGGTACCGTTACCATGACGACGGCTCCGGCAGCGAGATCCCTAGCAACGTCAACAACAACAACTCGCCACCAGCAGTGCCCTACGAGAAGAAGCTCCAAATCGAGATGGCTTCGCGCAAATACTCCACCGAGGCCGAAGCCGAGGGCGAGGGCGGCGACCTTATCGGTAAACTTCTCGGCATTCACGACAGGACCGTCAACGAGCTGTTCGTTTCTTCCGCCGACGTGGCGGCGAAGTTATTGGGCGTGAATAATAAATGA
Protein Sequence: MDIKTEEVISEAKVETNSNEDNMDGVKMERPERLRTTSIDSDNQSDRSDEEYHRRSRKRAASPMSPRQMNAIKRTAQYECPQCPQAFESTHTRDLHRFTAHRDDSRADFKDFVAFATKKFPEISRKCPDIARGGPFTTDRFRCERCTRDFPCGEALDVHRKSCVSPARVSTPDSRDRSDFFTKLELGRNFGVPETLTPPMERFIAKYDDGKFAENGLRHMDSRRDLADIQSIINVTSAHTLLQRLTEPRAPLESAMLTPPDTVSKDRDQEEAQDSFAAEFRRMKLRGEFPCRLCPAKFPNLRALKGHNRVHLNGPAPYRCNMCPFGSLEKASVTRHMREHNGDRPFECAVCNYAFTTKANCERHLRNRHAKVTREEVKRSIIYYPSKDPSNNEHSHSRDDTSRSLSFNASESIERRNECTGRETPRSHFSPNFITDRHPVSALTPTPLPDTPSTTPLDSDHSISKIKVKAMAQLKQIPEFRPEITFKANEPEDSADEYDYDHNEPMNLVVDDCNALDLSNKKRDTDDEPKAPPRPSFEPDPVSVAASAFEKTKFLLAQQQQRLFDTPLPKIDPAFYATQLSQLYASTIPGLPGLPLTPSFPLNPYFLQTPFFPNPTDSQELAEIKQRLQKEIIRAGLNLSGGGIMTPEPTIAQPKEEPEEEEQKPPPRESSPKPPPRPESPAPLPNTLVSQTDSVKMVIKNGVLMPKQKQRRYRTERPFSCSQCSARFTLRSNMERHVKQQHPQHWSNRRPSARAPPPYSTSDTLADRVRYALLARQLERPLQQPDHSPVRRDSDEVADNEDEDDTLIIDEEDQEDGRPEELTAAHRAAAEILMATRQQELHKDFDLKIAGNLINKPVSLTPEKTETGTDPIPLDSQDPLPLPIVPTRSDEEEDEEGLVASTSEGNNSGSDENKSESDTNAQPPKKKSAYSLAPNRVSCPYCHRKFPWSSSLRRHVLTHTGQKPFKCPHCTLLFTTKSNCDRHLLRKHGGSARAILAEPIQETVPQPQPTSNDTTRTVPERPFKCASCPTSTFSSLETLKKHLSSRHSTADSQPGSPSEETPEDREGSPDSSLAFKCHLCEASFSDRGGALRHLASAHAVEYEQLVSKGALDATSDRSESADDDDRGKFPDHANRKVVCAFCVRRFWSAEDLRRHMRTHSGERPFACDLCHRRFTLKHSMLRHRKKHRDEPTDDEEVTPPNTPLEGLANGYRYHDDGSGSEIPSNVNNNNSPPAVPYEKKLQIEMASRKYSTEAEAEGEGGDLIGKLLGIHDRTVNELFVSSADVAAKLLGVNNK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01561517;
90% Identity: iTF_01547041; iTF_01544390; iTF_01543369; iTF_01545291;
80% Identity: -