Zhep016092.3
Basic Information
- Insect
- Zelleria hepariella
- Gene Symbol
- Rfx2
- Assembly
- GCA_949319315.1
- Location
- OX439390.1:1903590-1938449[-]
Transcription Factor Domain
- TF Family
- RFX
- Domain
- RFX domain
- PFAM
- PF02257
- TF Group
- Basic Domians group
- Description
- RFX is a regulatory factor which binds to the X box of MHC class II genes and is essential for their expression. The DNA-binding domain of RFX is the central domain of the protein and binds ssDNA as either a monomer or homodimer [1]. It recognize X-boxes (DNA of the sequence 5'-GTNRCC(0-3N)RGYAAC-3', where N is any nucleotide, R is a purine and Y is a pyrimidine) using a highly conserved 76-residue DNA-binding domain (DBD) [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 0.17 1.3e+03 0.4 0.0 3 16 203 216 202 221 0.85 2 3 9.5e-37 7.5e-33 113.4 0.0 3 78 268 343 266 344 0.97 3 3 2.5 2e+04 -3.3 0.0 24 31 678 685 663 692 0.64
Sequence Information
- Coding Sequence
- ATGACCGAGATGGGATTTGAGAATGTGTTCTACCTAGAAAACTTTGAGTGCGCGGCCGACGAGGTGCTCGTGGAGTCGTCGCCGCCCGCGTCGCCCTCTCAAATGGCGACGCGGCTCGCCACTCCCGCACAGAGTGCGACTCGTCCACCGTCGCCGGGCGGCACCCATCGCGAGCTGATCGTCATACCGGAGCTGCCCACCTCCATACACCTGCAACATGCCATCCAGCAGGTGTCCAGTACGGTGGTGGACGTGAATGGAGACAGTTCGGGCCACTCCAGTCCCACAGCGGAGACCCAGCACACCTACATCACTGTCTCAAGTGAAGGTGGCAACGGCGTCAACTATCACGTGCAATATGTGGAGCCTCAAGAGCTTTATTCGCAGCAGACTCACATGGAAACCCTCCGAACTTACCCGGTATACGGGGTGACGACGgtgggcggcgcggcggccgaCGCCGGCGCCGAGGCCGAGGCGGCGTGGGGCGGGGGCAGCGAGGCCGAGTTCGCGGCCTACGGCGTCGTGGTGGCCGGCGACGAGGCCGAGCAGCCGGCCTCGCCGGCCACGCCGCCGGCCAGCCACCAGCCGCCGCGCATGCCGCCCGCCACCGTGCAGTGGCTGCTGGATAACTATGAGACTGCTGACGTGGGGGCGTTGCTCTgtgcttcgctctccgcgggtcTCGGGCTACGGTTTCGGTACACGAAcgtcggccttcggccccgCGGGGACGAGGCCGAGCAGCTGGCCTCGCCGGCATCGCCGCCGGCCAGCCACCAGCCGCCGCGCATGCCGCCCGCCACCGTGCAGTGGCTGCTGGATAACTATGAGACTGCTGACGGAGTCTCGCTACCCCGGTCGACCCTCTACTCGCACTATCTTCGCCACTGCACCACCCACCGGCTAGATCCAGTCAACGCTGCCTCCTTTGGAAAACTCATCCGCTCAGTTTTTCTGGGCCTTCGCACGCGGCGACTCGGCACACGCGGAAACAGCAAATATCACTATTACGGGATACGGGCCAAGCCGAGCGCACGCGACAATGACCTTAGAGCCGATGAAGATAAGGACCTGCTGCCACCACAAGAGCCACGGCTCTCCGCGGAGCGCGACTCCACCGAGCGCGGCTCCGTGGGCTGCGGCGCGAGCGTCGCGCACAGACAGTACCTGGGCTGCGTCAGCGCGCCCGAACCACCGGAGATTACTGTCGAGGAACCACCGGACGACGAACCACAGCTGGCGCAGGAGCTAGAGGCGTTGCGGAGACATCACAGAGAGCACGGCGCCTCGTTCCTCGAAGCAGTAGCCGCCCTAGACACGTCAGCGGTCGAGCGCGCTCGGCGCTCGTTCTGGCGTCGCGCGCCGCGCGCCCTCTGTCGCCGCGCGCTCTACAAGCTACTGTCGCGCGCGGACGTGGCGGCCTGGCTCACGCGAGCCGAGCTGGCGCTGCATCAGCGCGCCGTGGAGTTACTGCTGCCCGATGTGCTGCGGCCCATACCGGCGCATCTCACACAGGCCATCCGCAACTTCGCCAAGACCCTCGAGTCGGCCCTCTCGGCGGGCTCGGCCGGCGCGCCGCCGCTcgctgcgcgggcgcaggccTCCGCCGCGGCCGCGCTCGCCGCCGCGCTGCGACGGTACACCTCGCTGAACCACCTGGCGCAGGCCGCTCGCGCTGTGCTGACCAACCAGCACCAGATACAACAGATGCTGTCAGATCTGAACCGAGTGGATTTCCGAGTGGTTCGCGAGCAAGCCGCCTGGGCTTGCGCTTGCGGCAGCGCCGACACCGCCCGACGGTTGGAGGCTGACTTCAAGGCAACACTCGGCCGCGGCGCGACGCTCGAGCAGTGGGCGGTGTGGCTCGAGAACTGTGTGAAGGTGTCTTTAGCGCCGCACGAGCGACGAGCCGACTACAgctcgcgcgcgcgccgcctgcTGCTCGACTGGTCCTTCTACTCCTCGCTGGTCATACGGGAGCTCACTCTGAGGTCCGCGGCGTCTTTCGGCTCGTTCCACCTCATCCGTCTTCTGTACGACGAATACGTCGCGTATCTGATCGAGCGACGAGTGGCGGCGCATGAGCGGACACCGCCCATCGCCGTCATGCACAGAGCTCAGGAGGAAGAAGACGAGTCCCAGGACGAGACCCCGCGCGCGGAAGGCGAGGAGGACGAGCCGGACTGGGACTGGGAGGACGACGACGAAGAGGAGGACGACGAGATCGACTGCAAGAAGCCCAAGAACAACTGA
- Protein Sequence
- MTEMGFENVFYLENFECAADEVLVESSPPASPSQMATRLATPAQSATRPPSPGGTHRELIVIPELPTSIHLQHAIQQVSSTVVDVNGDSSGHSSPTAETQHTYITVSSEGGNGVNYHVQYVEPQELYSQQTHMETLRTYPVYGVTTVGGAAADAGAEAEAAWGGGSEAEFAAYGVVVAGDEAEQPASPATPPASHQPPRMPPATVQWLLDNYETADVGALLCASLSAGLGLRFRYTNVGLRPRGDEAEQLASPASPPASHQPPRMPPATVQWLLDNYETADGVSLPRSTLYSHYLRHCTTHRLDPVNAASFGKLIRSVFLGLRTRRLGTRGNSKYHYYGIRAKPSARDNDLRADEDKDLLPPQEPRLSAERDSTERGSVGCGASVAHRQYLGCVSAPEPPEITVEEPPDDEPQLAQELEALRRHHREHGASFLEAVAALDTSAVERARRSFWRRAPRALCRRALYKLLSRADVAAWLTRAELALHQRAVELLLPDVLRPIPAHLTQAIRNFAKTLESALSAGSAGAPPLAARAQASAAAALAAALRRYTSLNHLAQAARAVLTNQHQIQQMLSDLNRVDFRVVREQAAWACACGSADTARRLEADFKATLGRGATLEQWAVWLENCVKVSLAPHERRADYSSRARRLLLDWSFYSSLVIRELTLRSAASFGSFHLIRLLYDEYVAYLIERRVAAHERTPPIAVMHRAQEEEDESQDETPRAEGEEDEPDWDWEDDDEEEDDEIDCKKPKNN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -