Basic Information

Gene Symbol
nfxl1
Assembly
GCA_018904105.1
Location
JAEIFR010000049.1:3818046-3821091[+]

Transcription Factor Domain

TF Family
zf-NF-X1
Domain
zf-NF-X1 domain
PFAM
PF01422
TF Group
Zinc-Coordinating Group
Description
This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 21 2 1.6e+04 -8.1 6.4 15 19 154 158 153 158 0.82
2 21 0.13 1e+03 -0.3 0.4 4 10 189 195 188 195 0.95
3 21 6.6e-08 0.00053 19.8 15.5 1 18 203 219 203 220 0.98
4 21 0.74 6e+03 -2.7 2.8 5 10 245 250 245 250 0.94
5 21 4.3e-08 0.00034 20.4 18.2 1 19 256 275 256 275 0.98
6 21 1.3 1e+04 -3.5 0.6 5 10 299 304 299 304 0.91
7 21 3.9e-08 0.00031 20.5 16.1 1 19 310 330 310 337 0.95
8 21 0.9 7.2e+03 -3.0 0.5 1 7 354 359 353 361 0.49
9 21 5e-08 0.0004 20.2 11.1 1 18 364 381 364 382 0.96
10 21 0.91 7.3e+03 -3.0 2.0 1 5 391 395 391 400 0.78
11 21 0.74 5.9e+03 -2.7 1.8 5 10 405 410 405 410 0.95
12 21 0.00036 2.9 7.9 17.2 1 18 416 433 416 434 0.97
13 21 3.4e-08 0.00027 20.7 14.7 1 19 443 461 437 461 0.90
14 21 1.1 8.9e+03 -3.3 2.0 6 10 489 493 489 493 0.98
15 21 5.5e-05 0.44 10.5 7.2 9 18 506 515 504 516 0.90
16 21 0.096 7.7e+02 0.1 5.0 1 11 528 537 528 538 0.88
17 21 5.3e-06 0.043 13.7 4.2 1 12 604 615 604 615 0.97
18 21 0.18 1.4e+03 -0.7 16.9 4 18 645 659 643 660 0.94
19 21 1.7 1.4e+04 -3.9 1.6 8 13 665 670 664 670 0.74
20 21 0.53 4.2e+03 -2.3 0.5 4 10 699 705 698 705 0.81
21 21 3.9e-07 0.0031 17.3 10.3 1 17 711 726 711 730 0.95

Sequence Information

Coding Sequence
ATGGAAAAGTTCAATAAGGTACAGGCAAAGAATTTAGCTGCGGCCCAGAAGCTTGTGGAGACGTACGCTTCTAGCTCCGAGGATGAGGGTGAACTAGACGAGAAACAAATTCTAGATCTGCTATACAAACACTATCAGAGCTCGCCAGATGAATCCGGCAACAGTGCAACAAAGCGCAACGATAATAATGCCAATCGTACAGCTACATTCTTGGAAAATACTTTGCATTCGGGTGCAGCGACATGTCTCATCTGCATTGGCAGCATACGCCGTGTGGAATCCATATGGTCTTGCAAGTCGTGCTACTGCTTCTTTCATCTCAATTGTATACAACGCTGGGCCAACGACAGCATCATGCAAATGAAAGTGAAGGCAGAGCAGCAGAGTGGAAACCAGGGTTATTACAATCATCTGGGCGAGTTTGTACCGCCCAAACGTCAGAAGTCGCCGCACTGGTGTTGTCCACAGTGTCGGAAGGATTACCAACCGGCAGATAAACCAACACAGTATGAATGTTTTTGCAGCAAGGAGCTTAACCCGCAGCCGCAACCTTTCCTGGTGCCTCACTCCTGTGGTGAAATTTGTGGCAAGTTATTGCAACCCAAGTGCGGCCACGATTGCAAACTGCTCTGTCATCCGGGCCCGTGTCCACCATGTGCACAGTTGATGCAAACCTCTTGTCTGTGTGGCAAATCGCCGCCACGCTCGGCCCGTTGCCTGGACAAGAACTGGAAGTGTCAGCAAAAATGTCAATTACTATTGCCCTGTGGCAAGCACAAGTGCAACCAGCCCTGCCATCGCCCTGGTCAGTGTCCACCATGCAGCAACAAGAGTTCCCAGTACTGTAACTGCAAACGCGAGCAGAAGGTGGTCAACTGCTCAGAGCCCAAATGGAAGTGTAGCAATATTTGTGGCGCTAGCTTCGCCTGTGGACTGCACAAATGTGAAAAGGTCTGCCATGAAGGACCCTGCGGTGGAGGCGAGTGTCCGTTGGGTGTACGCAGCTGCCCCTGTGGGAAGAGTAGCAAAGCCGGCAATTGCAGCGAGGTGGTAGAAACTTGCGGCGATACCTGTCAAAAGCTTCTGTCCTGTGGCAAACACACCTGTACCCAACGCTGCCATCGTGGAGCTTGCAACTTGTGCCTGGTGCGCACAACTAAAAAGTGTCGCTGTGGACACCACGAAAAGGAGATGCCCTGCTCTAAGGAGTTCACATGTGAATCCAAGTGCAAACTGATGCGCGATTGTGGCAAGCATGCATGTAACCGCAAGTGCTGTGGCGATCAGTGTCCACCCTGCGAGAAAATCTGTGGCAAGCAGTTGAGTTGCAATAAGCACAAGTGTCAATCTGTATGCCACAATGGTCCCTGCTATCCCTGCAAGCTGGAATCGCAGGTTAACTGCCGCTGCGGCAAAACGCGTCGCAGCGTGCCCTGTGGACGCGAGAAAAATGCACGCATTGTCTGTCAGGAGTTGTGCCGCATCACATCCAAGTGTCACCACGCCATAAAACATCGTTGCCACAAGGGAGAATGCCCACCCTGTGCCCAGCCATGCGGCTTGCCCAACAACACGAGTAACTGCTCCCACATCTGTAAGGCACGCTGCCATGCAGCTATTCGCGTACCGAAACCAGCAGATGCTGCAGTACGTTCTCGTACTGATAAGTACGAGTATCGCGCATTGCCGCATCCGCGCTGCGAGGAGCCTGTCAGTGTCACATGCATTGGTGGTCATGAGGTGGCCAATTGGCCCTGCTGGAACTCGAAACCAACGTCGTGTGGACGAGAATGTGCGCGTAAATTGAAGTGCGGCAATCATAGCTGTGCACTAGTCTGTCACCCAGTGCCAAAATTGGATGACATGCAGCAACAGCCTGGCTGCGCTAATTGTGAGCAAGGATGTGCCATAGCGCGTCCCGCAGGATGTGTGCATGCCTGTCCAAAAGGCTGTCATCCGCCACCATGTGCGCCTTGCGGTGTGGTCATCAAAAGCAAATGCCACTGCGGTCTCATTCAGGTGCTCTACAAGTGCAGCGAGTTTTTCAAGAACGGAGGCACCGATCAAGAGATTGCGGAGCGTCGAGAAACAATGCACAGTTGTGGAAACCGTTGCTTGAAGAACATTGCCTGTGGTCATCGTTGCATGGCCCTTTGCCACTCTGGTGCGTGTCCTACTCCGGAGCTATGTCGCAAAAGAGTACGCATCTTCTGCGCCTGCAAGCGGATTAAGATGGAGATTACATGCGACAAACATCGTGCAGGGCAAACGGCTTTGGATTGCGACTCGAACTGCACCATGGAGCGTTCCAAGGCACAGGCAACAGAGCAGCAGCAATTGGAGCAAAAGTTACGCGAGGAAGAGGAGAGAAATCGCATAGAACTGGAAAAGTTTGAGAAGAAGTTCGGCAAGCGCAAGCCCAAGGAACGTAAAACTGTTGATGTGAAGGCGACCAAGCGGGAAATTGATTGGAAGCGCATAGCCATCTATGCGGTGTCCCTGCTCGCTGTTCTAGTTGCCCTCGCTGTGGCTTACTATGCCGATAGCTAA
Protein Sequence
MEKFNKVQAKNLAAAQKLVETYASSSEDEGELDEKQILDLLYKHYQSSPDESGNSATKRNDNNANRTATFLENTLHSGAATCLICIGSIRRVESIWSCKSCYCFFHLNCIQRWANDSIMQMKVKAEQQSGNQGYYNHLGEFVPPKRQKSPHWCCPQCRKDYQPADKPTQYECFCSKELNPQPQPFLVPHSCGEICGKLLQPKCGHDCKLLCHPGPCPPCAQLMQTSCLCGKSPPRSARCLDKNWKCQQKCQLLLPCGKHKCNQPCHRPGQCPPCSNKSSQYCNCKREQKVVNCSEPKWKCSNICGASFACGLHKCEKVCHEGPCGGGECPLGVRSCPCGKSSKAGNCSEVVETCGDTCQKLLSCGKHTCTQRCHRGACNLCLVRTTKKCRCGHHEKEMPCSKEFTCESKCKLMRDCGKHACNRKCCGDQCPPCEKICGKQLSCNKHKCQSVCHNGPCYPCKLESQVNCRCGKTRRSVPCGREKNARIVCQELCRITSKCHHAIKHRCHKGECPPCAQPCGLPNNTSNCSHICKARCHAAIRVPKPADAAVRSRTDKYEYRALPHPRCEEPVSVTCIGGHEVANWPCWNSKPTSCGRECARKLKCGNHSCALVCHPVPKLDDMQQQPGCANCEQGCAIARPAGCVHACPKGCHPPPCAPCGVVIKSKCHCGLIQVLYKCSEFFKNGGTDQEIAERRETMHSCGNRCLKNIACGHRCMALCHSGACPTPELCRKRVRIFCACKRIKMEITCDKHRAGQTALDCDSNCTMERSKAQATEQQQLEQKLREEEERNRIELEKFEKKFGKRKPKERKTVDVKATKREIDWKRIAIYAVSLLAVLVALAVAYYADS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01552851;
90% Identity
iTF_01555119;
80% Identity
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